DNATCO v4.1: results

Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2hom_A_G9_C10	AAA	AA00	90	0.07	AA00
02	2hom_A_C10_G11	AAA	AA00	94	0.22	AA00
03	2hom_A_G11_A12	AAA	AA00	77	0.20	AA00
04	2hom_A_A12_C13	AAA	AA00	83	0.13	AA00
05	2hom_A_C13_U14	AAA	AA00	94	0.14	AA00
06	2hom_A_U14_C15	AAA	AA00	69	0.26	AA00
07	2hom_A_C15_G16	AAA	AA00	79	0.27	AA00
08	2hom_A_G16_G17	AAA	AA00	39	0.29	AA00
09	2hom_A_G17_G18	AAw	AA01	80	0.20	AA01
10	2hom_A_G18_G19	AAA	AA08	36	0.40	AA08
11	2hom_A_G19_U20	NAN	NANT	0	0.29	AA02
12	2hom_A_U20_G21	NAN	NANT	0	1.77	OP24
13	2hom_A_G21_C22	AAA	AA08	76	0.25	AA08
14	2hom_A_C22_C23	AAA	AA00	77	0.22	AA00
15	2hom_A_C23_C24	AAA	AA00	69	0.28	AA00
16	2hom_A_C24_U25	NAN	NANT	0	1.86	IC03
17	2hom_A_G29_C30	AAA	AA08	88	0.20	AA08
18	2hom_A_C30_G31	AAw	AA01	56	0.30	AA01
19	2hom_A_G31_U32	AAw	AA11	74	0.38	AA11
20	2hom_A_U32_G33	NAN	NANT	0	0.69	AA11
21	2hom_A_G33_A34	NAN	NANT	0	0.90	AAS1
22	2hom_A_A34_A35	AAA	AA08	59	0.38	AA08
23	2hom_A_A35_G36	AAA	AA08	77	0.30	AA08
24	2hom_A_G36_G37	AAA	AA00	54	0.20	AA00
25	2hom_A_G37_C38	AAA	AA03	59	0.37	AA03
26	2hom_A_C38_U39	AAA	AA00	86	0.15	AA00
27	2hom_A_U39_G40	AAA	AA00	55	0.30	AA00
28	2hom_A_G40_A41	OPN	OP04	84	0.14	OP04
29	2hom_A_A41_G42	AAA	AA08	64	0.31	AA08
30	2hom_A_G42_A43	NAN	NANT	0	0.57	AB04
31	2hom_A_A43_A44	NAN	NANT	0	1.18	OP1S
32	2hom_A_A44_A45	NAN	NANT	0	1.57	AA10
33	2hom_A_A47_C48	AAA	AA00	89	0.17	AA00
34	2hom_A_C48_C49	AAA	AA08	85	0.09	AA08
35	2hom_A_C49_C50	AAA	AA00	85	0.17	AA00
36	2hom_A_C50_G51	AAA	AA00	70	0.22	AA00
37	2hom_A_G51_U52	OPN	OP01	43	0.68	OP01
38	2hom_A_U52_A53	NAN	NANT	0	1.60	AA01
39	2hom_A_A56_C57	AAA	AA08	10	0.61	AA08
40	2hom_A_C57_C58	AAA	AA00	83	0.17	AA00
41	2hom_A_C58_U59	AAA	AA00	89	0.20	AA00
42	2hom_A_U59_G60	AAA	AA00	57	0.34	AA00
43	2hom_A_G60_A61	NAN	NANT	0	0.45	ZZ01
44	2hom_A_A61_U62	OPN	OP18	14	0.73	OP18
45	2hom_A_U62_C63	NAN	NANT	0	0.98	OP13
46	2hom_A_C63_U64	AAA	AA00	66	0.17	AA00
47	2hom_A_U64_G65	AAA	AA00	59	0.30	AA00
48	2hom_A_G65_G66	AAA	AA00	82	0.27	AA00
49	2hom_A_G66_A67	AAw	AA01	54	0.28	AA01
50	2hom_A_A67_U68	AAA	AA03	85	0.30	AA03
51	2hom_A_U68_A69	OPN	OP04	29	0.21	OP04
52	2hom_A_A69_A70	AAA	AA00	72	0.25	AA00
53	2hom_A_A70_U71	AAA	AA00	65	0.21	AA00
54	2hom_A_U71_G72	OPN	OP04	29	0.49	OP04
55	2hom_A_G72_C73	NAN	NANT	0	1.03	OP30
56	2hom_A_C73_C74	AAA	AA00	60	0.23	AA00
57	2hom_A_C74_A75	AAA	AA00	72	0.20	AA00
58	2hom_A_A75_G76	AAA	AA00	78	0.25	AA00
59	2hom_A_G76_C77	AAA	AA04	50	0.54	AA04
60	2hom_A_C77_G78	NAN	NANT	0	0.41	ZZ01
61	2hom_A_A80_G81	AAA	AA04	36	0.41	AA04
62	2hom_A_G81_G82	AAw	AA01	44	0.25	AA01
63	2hom_A_G82_G83	AAA	AA08	26	0.46	AA08
64	2hom_A_G83_A84	AAu	AA07	43	0.32	AA07
65	2hom_A_A84_A85	NAN	NANT	0	0.54	IC07
66	2hom_A_A85_G86	B-A	BA10	47	0.34	BA10
67	2hom_A_G86_U87	AAA	AA00	94	0.15	AA00
68	2hom_A_U87_C88	AAA	AA00	87	0.18	AA00
69	2hom_A_C88_G89	AAA	AA00	80	0.19	AA00
70	2hom_A_G89_C90	AAA	AA00	82	0.17	AA00
71	2hom_A_C90_A91	NAN	NANT	0	1.05	OP01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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