DNATCO v4.1: results

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2hol_A_G9_C10	AAA	AA00	78	0.15	AA00
02	2hol_A_C10_G11	AAA	AA00	88	0.24	AA00
03	2hol_A_G11_A12	AAA	AA00	75	0.22	AA00
04	2hol_A_A12_C13	AAA	AA00	90	0.11	AA00
05	2hol_A_C13_U14	AAA	AA00	81	0.18	AA00
06	2hol_A_U14_C15	AAA	AA08	87	0.20	AA08
07	2hol_A_C15_G16	AAA	AA00	77	0.33	AA00
08	2hol_A_G16_G17	AAA	AA00	46	0.27	AA00
09	2hol_A_G17_G18	AAw	AA01	73	0.21	AA01
10	2hol_A_G18_G19	AAA	AA08	38	0.39	AA08
11	2hol_A_G19_U20	NAN	NANT	0	0.38	AB01
12	2hol_A_U20_G21	NAN	NANT	0	1.76	OP24
13	2hol_A_G21_C22	AAA	AA08	77	0.26	AA08
14	2hol_A_C22_C23	AAA	AA00	95	0.15	AA00
15	2hol_A_C23_C24	AAA	AA00	73	0.24	AA00
16	2hol_A_C24_U25	NAN	NANT	0	2.00	IC03
17	2hol_A_C30_G31	AAw	AA06	71	0.28	AA06
18	2hol_A_G31_U32	NAN	NANT	0	0.57	AA01
19	2hol_A_U32_G33	NAN	NANT	0	0.57	AB2S
20	2hol_A_G33_A34	NAN	NANT	0	0.90	AAS1
21	2hol_A_A34_A35	AAA	AA04	27	0.59	AA04
22	2hol_A_A35_G36	AAA	AA00	69	0.29	AA00
23	2hol_A_G36_G37	AAA	AA00	68	0.20	AA00
24	2hol_A_G37_C38	AAA	AA00	21	0.36	AA00
25	2hol_A_C38_U39	AAA	AA00	81	0.15	AA00
26	2hol_A_U39_G40	AAA	AA08	72	0.23	AA08
27	2hol_A_G40_A41	OPN	OP04	77	0.20	OP04
28	2hol_A_A41_G42	AAA	AA08	62	0.32	AA08
29	2hol_A_G42_A43	NAN	NANT	0	0.56	AB04
30	2hol_A_A43_A44	NAN	NANT	0	1.21	OP1S
31	2hol_A_A44_A45	NAN	NANT	0	1.43	BB13
32	2hol_A_A47_C48	AAA	AA00	88	0.18	AA00
33	2hol_A_C48_C49	AAA	AA00	81	0.13	AA00
34	2hol_A_C49_C50	AAA	AA00	84	0.17	AA00
35	2hol_A_C50_G51	AAA	AA00	59	0.26	AA00
36	2hol_A_G51_U52	OPN	OP02	13	0.44	OP02
37	2hol_A_U52_A53	NAN	NANT	0	1.75	AA01
38	2hol_A_A56_C57	NAN	NANT	0	0.79	AA08
39	2hol_A_C57_C58	AAA	AA00	77	0.18	AA00
40	2hol_A_C58_U59	AAA	AA00	72	0.23	AA00
41	2hol_A_U59_G60	AAA	AA00	49	0.31	AA00
42	2hol_A_G60_A61	NAN	NANT	0	0.39	ZZ01
43	2hol_A_A61_U62	NAN	NANT	0	0.56	OP18
44	2hol_A_U62_C63	NAN	NANT	0	0.76	OP11
45	2hol_A_C63_U64	AAA	AA00	85	0.15	AA00
46	2hol_A_U64_G65	AAA	AA00	87	0.16	AA00
47	2hol_A_G65_G66	AAA	AA00	85	0.28	AA00
48	2hol_A_G66_A67	AAw	AA01	89	0.18	AA01
49	2hol_A_A67_U68	AAA	AA08	84	0.27	AA08
50	2hol_A_U68_A69	OPN	OP04	91	0.13	OP04
51	2hol_A_A69_A70	AAA	AA00	47	0.27	AA00
52	2hol_A_A70_U71	AAA	AA00	68	0.26	AA00
53	2hol_A_U71_G72	NAN	NANT	0	0.72	OP09
54	2hol_A_G72_C73	NAN	NANT	0	1.09	OP30
55	2hol_A_C73_C74	AAA	AA04	40	0.37	AA04
56	2hol_A_C74_A75	AAA	AA00	83	0.20	AA00
57	2hol_A_A75_G76	AAA	AA00	82	0.22	AA00
58	2hol_A_G76_C77	AAA	AA00	24	0.45	AA00
59	2hol_A_C77_G78	NAN	NANT	0	0.34	ZZ01
60	2hol_A_A80_G81	AAA	AA00	9	0.33	AA00
61	2hol_A_G81_G82	AAw	AA01	87	0.12	AA01
62	2hol_A_G82_G83	AAA	AA08	31	0.49	AA08
63	2hol_A_G83_A84	NAN	NANT	0	0.48	AA07
64	2hol_A_A84_A85	NAN	NANT	0	0.45	IC07
65	2hol_A_A85_G86	B-A	BA10	59	0.33	BA10
66	2hol_A_G86_U87	AAA	AA00	94	0.12	AA00
67	2hol_A_U87_C88	AAA	AA00	80	0.19	AA00
68	2hol_A_C88_G89	AAA	AA00	89	0.16	AA00
69	2hol_A_G89_C90	AAA	AA00	92	0.19	AA00
70	2hol_A_C90_A91	NAN	NANT	0	1.16	OP01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible