DNATCO v4.1: results

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2hok_A_G9_C10	AAA	AA00	83	0.12	AA00
02	2hok_A_C10_G11	AAA	AA00	88	0.21	AA00
03	2hok_A_G11_A12	AAA	AA00	81	0.18	AA00
04	2hok_A_A12_C13	AAA	AA00	86	0.16	AA00
05	2hok_A_C13_U14	AAA	AA00	47	0.27	AA00
06	2hok_A_U14_C15	AAA	AA08	85	0.20	AA08
07	2hok_A_C15_G16	AAA	AA00	76	0.30	AA00
08	2hok_A_G16_G17	AAA	AA00	51	0.31	AA00
09	2hok_A_G17_G18	AAw	AA01	65	0.24	AA01
10	2hok_A_G18_G19	AAA	AA08	21	0.41	AA08
11	2hok_A_G19_U20	NAN	NANT	0	0.39	AA01
12	2hok_A_U20_G21	NAN	NANT	0	1.61	OP24
13	2hok_A_G21_C22	AAA	AA00	42	0.32	AA00
14	2hok_A_C22_C23	AAA	AA00	84	0.19	AA00
15	2hok_A_C23_C24	NAN	NANT	0	0.60	AA11
16	2hok_A_C24_U25	NAN	NANT	0	0.85	AA07
17	2hok_A_G29_C30	AAw	AA01	27	0.39	AA01
18	2hok_A_C30_G31	AAw	AA06	42	0.46	AA06
19	2hok_A_G31_U32	AAw	AA11	87	0.28	AA11
20	2hok_A_U32_G33	NAN	NANT	0	0.95	AB2S
21	2hok_A_G33_A34	NAN	NANT	0	0.88	AAS1
22	2hok_A_A34_A35	AAA	AA08	27	0.46	AA08
23	2hok_A_A35_G36	AAA	AA00	71	0.29	AA00
24	2hok_A_G36_G37	AAA	AA00	70	0.18	AA00
25	2hok_A_G37_C38	AAA	AA00	40	0.34	AA00
26	2hok_A_C38_U39	AAA	AA00	81	0.15	AA00
27	2hok_A_U39_G40	AAA	AA00	46	0.31	AA00
28	2hok_A_G40_A41	OPN	OP04	57	0.20	OP04
29	2hok_A_A41_G42	AAA	AA00	39	0.38	AA00
30	2hok_A_G42_A43	NAN	NANT	0	0.55	AB04
31	2hok_A_A43_A44	NAN	NANT	0	1.03	OP1S
32	2hok_A_A44_A45	NAN	NANT	0	1.43	BB03
33	2hok_A_A47_C48	AAA	AA00	72	0.29	AA00
34	2hok_A_C48_C49	AAA	AA00	87	0.14	AA00
35	2hok_A_C49_C50	AAA	AA00	75	0.17	AA00
36	2hok_A_C50_G51	AAA	AA00	51	0.26	AA00
37	2hok_A_G51_U52	OPN	OP01	22	0.73	OP01
38	2hok_A_U52_A53	NAN	NANT	0	1.82	AA01
39	2hok_A_A56_C57	NAN	NANT	0	0.89	AA04
40	2hok_A_C57_C58	AAA	AA00	86	0.17	AA00
41	2hok_A_C58_U59	AAA	AA00	86	0.20	AA00
42	2hok_A_U59_G60	AAA	AA08	53	0.26	AA08
43	2hok_A_G60_A61	ZZZ	ZZ01	56	0.37	ZZ01
44	2hok_A_A61_U62	OPN	OP18	39	0.56	OP18
45	2hok_A_U62_C63	NAN	NANT	0	0.83	OP11
46	2hok_A_C63_U64	AAA	AA00	93	0.10	AA00
47	2hok_A_U64_G65	AAA	AA00	49	0.29	AA00
48	2hok_A_G65_G66	AAA	AA00	58	0.30	AA00
49	2hok_A_G66_A67	AAw	AA01	71	0.26	AA01
50	2hok_A_A67_U68	AAA	AA08	68	0.28	AA08
51	2hok_A_U68_A69	OPN	OP04	41	0.23	OP04
52	2hok_A_A69_A70	AAA	AA04	47	0.39	AA04
53	2hok_A_A70_U71	AAA	AA00	56	0.30	AA00
54	2hok_A_C73_C74	AAA	AA00	41	0.27	AA00
55	2hok_A_C74_A75	AAA	AA00	79	0.20	AA00
56	2hok_A_A75_G76	AAA	AA00	42	0.25	AA00
57	2hok_A_G76_C77	AAA	AA00	19	0.50	AA00
58	2hok_A_C77_G78	NAN	NANT	0	0.33	ZZ01
59	2hok_A_A80_G81	AAA	AA04	28	0.46	AA04
60	2hok_A_G81_G82	AAw	AA01	70	0.18	AA01
61	2hok_A_G82_G83	AAA	AA08	65	0.45	AA08
62	2hok_A_G83_A84	AAu	AA07	56	0.29	AA07
63	2hok_A_A84_A85	NAN	NANT	0	0.48	IC07
64	2hok_A_A85_G86	B-A	BA10	28	0.45	BA10
65	2hok_A_G86_U87	AAA	AA00	90	0.22	AA00
66	2hok_A_U87_C88	AAA	AA00	73	0.27	AA00
67	2hok_A_C88_G89	AAA	AA00	86	0.17	AA00
68	2hok_A_G89_C90	AAA	AA00	21	0.26	AA00
69	2hok_A_C90_A91	NAN	NANT	0	1.11	OP01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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