Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2hmi_E_DA801_DT802 | NAN | NANT | 0 | 0.66 |
| 02 | 2hmi_E_DT802_DG803 | NAN | NANT | 0 | 0.47 |
| 03 | 2hmi_E_DG803_DG804 | NAN | NANT | 0 | 0.52 |
| 04 | 2hmi_E_DG804_DC805 | NAN | NANT | 0 | 0.57 |
| 05 | 2hmi_E_DC805_DG806 | NAN | NANT | 0 | 0.55 |
| 06 | 2hmi_E_DG806_DC807 | NAN | NANT | 0 | 0.46 |
| 07 | 2hmi_E_DC807_DC808 | NAN | NANT | 0 | 0.28 |
| 08 | 2hmi_E_DC808_DC809 | miB | BB13 | 37 | 0.33 |
| 09 | 2hmi_E_DC809_DG810 | NAN | NANT | 0 | 0.35 |
| 10 | 2hmi_E_DG810_DA811 | BBw | BB02 | 53 | 0.40 |
| 11 | 2hmi_E_DA811_DA812 | NAN | NANT | 0 | 0.48 |
| 12 | 2hmi_E_DA812_DC813 | NAN | NANT | 0 | 0.52 |
| 13 | 2hmi_E_DC813_DA814 | BBB | BB00 | 43 | 0.45 |
| 14 | 2hmi_E_DA814_DG815 | BBB | BB00 | 68 | 0.33 |
| 15 | 2hmi_E_DG815_DG816 | BBw | BB11 | 33 | 0.54 |
| 16 | 2hmi_E_DG816_DG817 | NAN | NANT | 0 | 0.51 |
| 17 | 2hmi_E_DG817_DA818 | NAN | NANT | 0 | 0.61 |
| 18 | 2hmi_E_DA818_DC819 | NAN | NANT | 0 | 0.89 |
| 19 | 2hmi_F_DG821_DT822 | BBw | BB03 | 28 | 0.52 |
| 20 | 2hmi_F_DT822_DC823 | NAN | NANT | 0 | 0.51 |
| 21 | 2hmi_F_DC823_DC824 | NAN | NANT | 0 | 0.43 |
| 22 | 2hmi_F_DC824_DC825 | NAN | NANT | 0 | 0.80 |
| 23 | 2hmi_F_DC825_DT826 | NAN | NANT | 0 | 0.68 |
| 24 | 2hmi_F_DT826_DG827 | B12 | BB04 | 60 | 0.25 |
| 25 | 2hmi_F_DG827_DT828 | miB | BB13 | 65 | 0.18 |
| 26 | 2hmi_F_DT828_DT829 | NAN | NANT | 0 | 0.51 |
| 27 | 2hmi_F_DT829_DC830 | miB | BB13 | 53 | 0.43 |
| 28 | 2hmi_F_DC830_DG831 | NAN | NANT | 0 | 0.67 |
| 29 | 2hmi_F_DG831_DG832 | NAN | NANT | 0 | 0.66 |
| 30 | 2hmi_F_DG832_DG833 | B-A | BA08 | 46 | 0.35 |
| 31 | 2hmi_F_DG833_DC834 | NAN | NANT | 0 | 0.39 |
| 32 | 2hmi_F_DC834_DG835 | NAN | NANT | 0 | 0.37 |
| 33 | 2hmi_F_DG835_DC836 | NAN | NANT | 0 | 0.32 |
| 34 | 2hmi_F_DC836_DC837 | NAN | NANT | 0 | 0.39 |
| 35 | 2hmi_F_DC837_DA838 | AAA | AA02 | 16 | 0.50 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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