Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
T:O6-methyl-guanine in the polymerase-2 basepair position
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2hhv_B_DG19_DC20 | AAA | AA00 | 54 | 0.30 |
| 02 | 2hhv_B_DC20_DG21 | A-B | AB01 | 83 | 0.23 |
| 03 | 2hhv_B_DG21_DA22 | BBB | BB00 | 75 | 0.29 |
| 04 | 2hhv_B_DA22_DT23 | BBB | BB00 | 95 | 0.13 |
| 05 | 2hhv_B_DT23_DC24 | BBB | BB00 | 87 | 0.23 |
| 06 | 2hhv_B_DC24_DA25 | BBB | BB00 | 94 | 0.18 |
| 07 | 2hhv_B_DA25_DG26 | B-A | BA01 | 59 | 0.21 |
| 08 | 2hhv_B_DG26_DC27 | AAA | AA00 | 63 | 0.32 |
| 09 | 2hhv_B_DC27_DT28 | AAA | AA00 | 75 | 0.22 |
| 10 | 2hhv_B_DT28_DT29 | AAA | AA00 | 85 | 0.18 |
| 11 | 2hhv_B_DT29_DG30 | A-B | AB05 | 81 | 0.25 |
| 12 | 2hhv_C_DT4_DA5 | NAN | NANT | 0 | 0.87 |
| 13 | 2hhv_C_DA5_DC6 | OPN | OP12 | 61 | 0.30 |
| 14 | 2hhv_C_DC6_6OG7 | AAA | AA00 | 88 | 0.18 |
| 15 | 2hhv_C_6OG7_DA8 | AAw | AA01 | 96 | 0.17 |
| 16 | 2hhv_C_DA8_DG9 | A-B | AB05 | 70 | 0.27 |
| 17 | 2hhv_C_DG9_DC10 | BBB | BB00 | 88 | 0.23 |
| 18 | 2hhv_C_DC10_DT11 | BBB | BB00 | 98 | 0.14 |
| 19 | 2hhv_C_DT11_DG12 | B12 | BB04 | 93 | 0.17 |
| 20 | 2hhv_C_DG12_DA13 | BBB | BB00 | 97 | 0.12 |
| 21 | 2hhv_C_DA13_DT14 | BBB | BB00 | 98 | 0.07 |
| 22 | 2hhv_C_DT14_DC15 | B12 | BB04 | 89 | 0.23 |
| 23 | 2hhv_C_DC15_DG16 | NAN | NANT | 0 | 0.50 |
| 24 | 2hhv_C_DG16_DC17 | A-B | AB01 | 52 | 0.46 |
| 25 | 2hhv_C_DC17_DA18 | B12 | BB04 | 53 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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