Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2han_C_DC1_DA2 | A-B | AB05 | 12 | 0.31 |
| 02 | 2han_C_DA2_DA3 | BBw | BB02 | 43 | 0.35 |
| 03 | 2han_C_DA3_DG4 | BBB | BB00 | 41 | 0.35 |
| 04 | 2han_C_DG4_DG5 | B-A | BA13 | 71 | 0.23 |
| 05 | 2han_C_DG5_DG6 | AAA | AA00 | 73 | 0.30 |
| 06 | 2han_C_DG6_DT7 | A-B | AB04 | 47 | 0.41 |
| 07 | 2han_C_DT7_DT8 | BBB | BB00 | 52 | 0.22 |
| 08 | 2han_C_DT8_DC9 | BBB | BB00 | 60 | 0.42 |
| 09 | 2han_C_DC9_DA10 | BB2 | BB07 | 88 | 0.35 |
| 10 | 2han_C_DA10_DA11 | BBB | BB00 | 51 | 0.23 |
| 11 | 2han_C_DA11_DT12 | B-A | BA05 | 94 | 0.27 |
| 12 | 2han_C_DT12_DG13 | A-B | AB01 | 27 | 0.38 |
| 13 | 2han_C_DG13_DC14 | B12 | BB04 | 69 | 0.22 |
| 14 | 2han_C_DC14_DA15 | BBB | BB00 | 85 | 0.14 |
| 15 | 2han_C_DA15_DC16 | B-A | BA01 | 29 | 0.25 |
| 16 | 2han_C_DC16_DT17 | A-B | AB01 | 83 | 0.27 |
| 17 | 2han_C_DT17_DT18 | BBB | BB00 | 82 | 0.15 |
| 18 | 2han_C_DT18_DG19 | BBB | BB00 | 91 | 0.13 |
| 19 | 2han_C_DG19_DT20 | BBB | BB01 | 55 | 0.27 |
| 20 | 2han_D_DG1_DA2 | SYN | BBS1 | 82 | 0.17 |
| 21 | 2han_D_DA2_DC3 | B-A | BA05 | 62 | 0.36 |
| 22 | 2han_D_DC3_DA4 | A-B | AB01 | 21 | 0.30 |
| 23 | 2han_D_DA4_DA5 | B12 | BB04 | 54 | 0.18 |
| 24 | 2han_D_DA5_DG6 | BBB | BB01 | 69 | 0.18 |
| 25 | 2han_D_DG6_DT7 | BBB | BB00 | 57 | 0.35 |
| 26 | 2han_D_DT7_DG8 | BBB | BB00 | 82 | 0.22 |
| 27 | 2han_D_DG8_DC9 | BBB | BB00 | 82 | 0.21 |
| 28 | 2han_D_DC9_DA10 | BB2 | BB07 | 97 | 0.22 |
| 29 | 2han_D_DA10_DT11 | BBB | BB00 | 83 | 0.18 |
| 30 | 2han_D_DT11_DT12 | BBB | BB01 | 94 | 0.15 |
| 31 | 2han_D_DT12_DG13 | BBB | BB00 | 58 | 0.34 |
| 32 | 2han_D_DG13_DA14 | BB2 | BB07 | 92 | 0.25 |
| 33 | 2han_D_DA14_DA15 | BBB | BB00 | 77 | 0.18 |
| 34 | 2han_D_DA15_DC16 | B-A | BA13 | 80 | 0.24 |
| 35 | 2han_D_DC16_DC17 | A-B | AB05 | 17 | 0.26 |
| 36 | 2han_D_DC17_DC18 | BBB | BB00 | 81 | 0.25 |
| 37 | 2han_D_DC18_DT19 | BBB | BB00 | 36 | 0.26 |
| 38 | 2han_D_DT19_DT20 | BBB | BB00 | 56 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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