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Conformers: ABBIImiBZICOPNSYNN
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Hepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene Product

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012h8r_E_DC1_DT2NANNANT01.34 AA05
022h8r_E_DT2_DT3A-BAB03200.31 AB03
032h8r_E_DT3_DG4NANNANT00.46 BB10
042h8r_E_DG4_DG5NANNANT00.43 BB02
052h8r_E_DG5_DT6NANNANT00.49 BB01
062h8r_E_DT6_DT7BBBBB00700.41 BB00
072h8r_E_DT7_DA8B12BB04470.37 BB04
082h8r_E_DA8_DA9BBBBB00200.38 BB00
092h8r_E_DA9_DT10BBBBB00350.26 BB00
102h8r_E_DT10_DA11BBBBB00500.28 BB00
112h8r_E_DA11_DA12B12BB04800.35 BB04
122h8r_E_DA12_DT13BBwBB02640.24 BB02
132h8r_E_DT13_DT14BBBBB00760.19 BB00
142h8r_E_DT14_DC15BBBBB00410.28 BB00
152h8r_E_DC15_DA16miBBB15380.35 BB15
162h8r_E_DA16_DC17NANNANT00.44 BB10
172h8r_E_DC17_DC18B12BB04300.32 BB04
182h8r_E_DC18_DA19B12BB04170.41 BB04
192h8r_E_DA19_DG20NANNANT00.47 BB11
202h8r_F_DG2_DC3NANNANT01.17 BB13
212h8r_F_DC3_DT4NANNANT00.95 IC06
222h8r_F_DT4_DG5NANNANT00.85 BB08
232h8r_F_DG5_DG6BBwBB02250.41 BB02
242h8r_F_DG6_DT7NANNANT00.45 BB02
252h8r_F_DT7_DG8miBBB10190.30 BB10
262h8r_F_DG8_DA9B12BB04520.34 BB04
272h8r_F_DA9_DA10BBwBB02710.26 BB02
282h8r_F_DA10_DT11BBBBB00340.27 BB00
292h8r_F_DT11_DT12BBBBB00180.28 BB00
302h8r_F_DT12_DA13BB2BB07510.27 BB07
312h8r_F_DA13_DT14miBBB15810.19 BB15
322h8r_F_DT14_DT15BBwBB02210.32 BB02
332h8r_F_DT15_DA16BBBBB01220.42 BB01
342h8r_F_DA16_DA17miBBB13490.28 BB13
352h8r_F_DA17_DC18NANNANT00.79 BB12
362h8r_F_DC18_DC19BBwBB16790.35 BB16
372h8r_F_DC19_DA20NANNANT00.44 BB04
382h8r_F_DA20_DA21BBBBB00450.64 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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