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Conformers: ABBIImiBZICOPNSYNN
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Structure of FitAB bound to IR36 DNA fragment

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012h1o_U_DA1_DG2NANNANT00.52 BA17
022h1o_U_DG2_DA3BBBBB00810.30 BB00
032h1o_U_DA3_DT4BBBBB00750.29 BB00
042h1o_U_DT4_DT5BBBBB00830.21 BB00
052h1o_U_DT5_DG6BBBBB00850.26 BB00
062h1o_U_DG6_DC7BBwBB02910.16 BB02
072h1o_U_DC7_DT8BBwBB02880.21 BB02
082h1o_U_DT8_DA9BBBBB00680.23 BB00
092h1o_U_DA9_DT10BBBBB00470.30 BB00
102h1o_U_DT10_DC11BBBBB00770.28 BB00
112h1o_U_DC11_DA12BB2BB07520.15 BB07
122h1o_U_DA12_DT13miBBB13740.23 BB13
132h1o_U_DT13_DT14NANNANT00.46 BB02
142h1o_U_DT14_DT15BBBBB0090.46 BB00
152h1o_U_DT15_DT16NANNANT00.56 BB03
162h1o_U_DT16_DT17BBBBB00650.24 BB00
172h1o_U_DT17_DT18BBBBB00880.22 BB00
182h1o_U_DT18_DT19BBwBB02910.15 BB02
192h1o_U_DT19_DT20BBBBB00750.28 BB00
202h1o_U_DT20_DA21miBBB13920.13 BB13
212h1o_U_DA21_DT22NANNANT00.54 BB02
222h1o_U_DT22_DT23NANNANT00.63 AB02
232h1o_U_DT23_DT24BBwBB02550.28 BB02
242h1o_U_DT24_DT25BBwBB03470.36 BB03
252h1o_U_DT25_DG26NANNANT00.69 AB02
262h1o_U_DG26_DA27BBwBB02270.51 BB02
272h1o_U_DA27_DT28BBBBB00540.26 BB00
282h1o_U_DT28_DA29NANNANT00.64 BB07
292h1o_U_DA29_DG30miBBB13580.28 BB13
302h1o_U_DG30_DC31NANNANT00.51 BB03
312h1o_U_DC31_DA32NANNANT00.54 BB08
322h1o_U_DA32_DT33miBBB13420.35 BB13
332h1o_U_DT33_5IU34NANNANT00.49 BB02
342h1o_U_5IU34_DT35BBBBB00430.50 BB00
352h1o_U_DT35_DG36BB2BB07300.47 BB07
362h1o_V_DC37_DA38NANNANT00.91 BB03
372h1o_V_DA38_DA39BBBBB00840.18 BB00
382h1o_V_DA39_DA40BBBBB00890.17 BB00
392h1o_V_DA40_DT41BBwBB02940.16 BB02
402h1o_V_DT41_DG42BBBBB00290.47 BB00
412h1o_V_DG42_DC43NANNANT00.62 AB02
422h1o_V_DC43_DT44BBwBB02830.26 BB02
432h1o_V_DT44_DA45BBwBB03350.42 BB03
442h1o_V_DA45_DT46BBwBB02180.37 BB02
452h1o_V_DT46_DC47NANNANT00.59 BB02
462h1o_V_DC47_DA48B12BB04580.27 BB04
472h1o_V_DA48_DA49NANNANT00.71 AB02
482h1o_V_DA49_DA50NANNANT00.73 AB02
492h1o_V_DA50_DA51NANNANT00.57 AB02
502h1o_V_DA51_5IU52miBBB13610.31 BB13
512h1o_V_5IU52_DA53NANNANT00.58 BB02
522h1o_V_DA53_DA54BBwBB02520.29 BB02
532h1o_V_DA54_DA55BBBBB00840.24 BB00
542h1o_V_DA55_DA56BBwBB02850.15 BB02
552h1o_V_DA56_DA57BBBBB00720.23 BB00
562h1o_V_DA57_DA58BBwBB02900.18 BB02
572h1o_V_DA58_DA59miBBB13740.27 BB13
582h1o_V_DA59_DA60NANNANT00.52 BB03
592h1o_V_DA60_DT61NANNANT00.46 AB02
602h1o_V_DT61_DG62BBBBB00190.46 BB00
612h1o_V_DG62_DA63NANNANT00.57 AB02
622h1o_V_DA63_DT64NANNANT00.41 BB13
632h1o_V_DT64_DA65BBBBB00170.47 BB00
642h1o_V_DA65_DG66NANNANT00.37 BB15
652h1o_V_DG66_DC67BBwBB03680.31 BB03
662h1o_V_DC67_DA68B12BB04560.43 BB04
672h1o_V_DA68_DA69BBBBB00700.29 BB00
682h1o_V_DA69_DT70NANNANT00.85 AB02
692h1o_V_DT70_DC71NANNANT00.40 BB03
702h1o_V_DC71_DT72NANNANT00.80 BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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