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Conformers: ABBIImiBZICOPNSYNN
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Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate

Results of the assignment of 138 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012h0z_A_DA0_G1NANNANT01.51 OP23
0022h0z_A_G1_C2NANNANT00.82 OP27
0032h0z_A_C2_G3AAAAA00560.23 AA00
0042h0z_A_G3_C4AAAAA00500.18 AA00
0052h0z_A_C4_C5NANNANT00.39 AA01
0062h0z_A_G7_G8AAAAA00430.38 AA00
0072h0z_A_G8_A9AAAAA00720.31 AA00
0082h0z_A_A9_C10AAAAA00810.14 AA00
0092h0z_A_C10_U11AAAAA00600.25 AA00
0102h0z_A_U11_U12AAAAA00960.14 AA00
0112h0z_A_U12_A13AAAAA00970.12 AA00
0122h0z_A_A13_A14AAAAA00840.13 AA00
0132h0z_A_A14_A15AAAAA00810.13 AA00
0142h0z_A_A15_G16AAAAA00890.12 AA00
0152h0z_A_G16_C17AAAAA00860.14 AA00
0162h0z_A_C17_C18AAAAA00900.19 AA00
0172h0z_A_C18_A19AAAAA08760.28 AA08
0182h0z_A_A19_U20AAAAA00530.24 AA00
0192h0z_B_G23_G24AAAAA00290.26 AA00
0202h0z_B_G24_C25AAAAA00940.14 AA00
0212h0z_B_C25_U26AAAAA00840.14 AA00
0222h0z_B_U26_U27AAAAA00850.15 AA00
0232h0z_B_U27_U28AAAAA00970.10 AA00
0242h0z_B_U28_A29AAAAA00890.18 AA00
0252h0z_B_A29_A30AAAAA00880.16 AA00
0262h0z_B_A30_G31AAwAA01890.13 AA01
0272h0z_B_G31_U32AAAAA00720.18 AA00
0282h0z_B_U32_U33AAAAA08850.23 AA08
0292h0z_B_U33_G34AAAAA08670.30 AA08
0302h0z_B_G34_A35NANNANT01.07 OP28
0312h0z_B_A35_C36NANNANT00.45 OP26
0322h0z_B_C36_G37AAwAA06480.34 AA06
0332h0z_B_G37_A38AAAAA00530.22 AA00
0342h0z_B_A38_G39AAAAA00580.35 AA00
0352h0z_B_G39_G40AAAAA00610.22 AA00
0362h0z_B_G40_G41ICLIC01750.30 IC01
0372h0z_B_G41_C42NANNANT00.54 OP13
0382h0z_B_C42_A43AAAAA00670.23 AA00
0392h0z_B_A43_G44AAAAA00840.13 AA00
0402h0z_B_G44_G45AAAAA00850.15 AA00
0412h0z_B_G45_G46AAAAA00870.17 AA00
0422h0z_B_G46_U47AAAAA00920.17 AA00
0432h0z_B_U47_U48A-BAB01320.27 AB01
0442h0z_B_U48_U49NANNANT00.63 OP29
0452h0z_B_U49_A50NANNANT00.84 OP30
0462h0z_B_A50_U51NANNANT00.67 OP16
0472h0z_B_U51_C52AAAAA00910.16 AA00
0482h0z_B_C52_G53AAAAA08300.37 AA08
0492h0z_B_G53_A54AAAAA00410.31 AA00
0502h0z_B_A54_G55NANNANT01.33 OP29
0512h0z_B_G55_A56NANNANT00.88 OPS1
0522h0z_B_A56_C57NANNANT00.39 AB04
0532h0z_B_C57_A58NANNANT02.03 OP09
0542h0z_B_A58_U59NANNANT00.77 OP21
0552h0z_B_U59_C60NANNANT00.66 OP11
0562h0z_B_C60_G61AAAAA00580.36 AA00
0572h0z_B_G61_G62AAAAA00840.09 AA00
0582h0z_B_G62_C63AAAAA00890.11 AA00
0592h0z_B_C63_G64AAAAA00890.19 AA00
0602h0z_B_G64_G65AAAAA00830.27 AA00
0612h0z_B_G65_G66AAAAA00400.32 AA00
0622h0z_B_G66_U67NANNANT00.43 OP09
0632h0z_B_U67_G68OPNOP11190.48 OP11
0642h0z_B_G68_C69AAAAA00750.27 AA00
0652h0z_B_C69_C70AAAAA00870.16 AA00
0662h0z_B_C70_C71AAAAA00970.12 AA00
0672h0z_B_C71_U72AAAAA00860.11 AA00
0682h0z_B_U72_G73AAAAA00890.12 AA00
0692h0z_B_G73_C74AAAAA00890.15 AA00
0702h0z_B_C74_G75AAAAA00850.18 AA00
0712h0z_B_G75_G76AAAAA00830.12 AA00
0722h0z_B_G76_U77AAAAA00920.08 AA00
0732h0z_B_U77_C78AAAAA00950.13 AA00
0742h0z_B_C78_U79NANNANT01.14 OP05
0752h0z_B_U79_U80NANNANT00.74 OP26
0762h0z_B_U80_C81AAAAA00920.18 AA00
0772h0z_B_C81_C82AAAAA00850.14 AA00
0782h0z_B_C82_U83AAAAA00840.20 AA00
0792h0z_B_U83_G84AAAAA00760.17 AA00
0802h0z_B_G84_C85AAAAA00910.14 AA00
0812h0z_B_C85_G86AAAAA00810.18 AA00
0822h0z_B_G86_A87AAAAA00730.18 AA00
0832h0z_B_A87_C88AAAAA00850.19 AA00
0842h0z_B_C88_C89AAwAA01680.24 AA01
0852h0z_B_C89_G90A-BAB05670.32 AB05
0862h0z_B_G90_U91NANNANT00.65 OP22
0872h0z_B_U91_U92OPNOP21400.48 OP21
0882h0z_B_U92_A93OPNOP11450.43 OP11
0892h0z_B_A93_G94NANNANT00.79 OP30
0902h0z_B_G94_A95B-ABA08400.65 BA08
0912h0z_B_A95_G96AAAAA08480.43 AA08
0922h0z_B_G96_G97AAAAA00660.24 AA00
0932h0z_B_G97_A98AAAAA00940.17 AA00
0942h0z_B_A98_C99AAAAA00930.09 AA00
0952h0z_B_C99_U100AAAAA00850.18 AA00
0962h0z_B_U100_G101AAAAA00740.36 AA00
0972h0z_B_G101_G102NANNANT00.54 AA01
0982h0z_B_A104_A105AAwAA06670.30 AA06
0992h0z_B_A105_A106AAAAA08910.20 AA08
1002h0z_B_A106_A107AAAAA08190.61 AA08
1012h0z_B_A107_C108NANNANT00.78 AA00
1022h0z_B_C108_C109AAAAA00920.11 AA00
1032h0z_B_C109_A110AAAAA00950.10 AA00
1042h0z_B_A110_C111AAAAA00950.07 AA00
1052h0z_B_C111_A112AAAAA00850.21 AA00
1062h0z_B_A112_G113AAAAA00880.17 AA00
1072h0z_B_G113_G114AAAAA00870.18 AA00
1082h0z_B_G114_C115OPNOP03860.29 OP03
1092h0z_B_C115_G116AAAAA08450.40 AA08
1102h0z_B_G116_A117AAAAA02500.25 AA02
1112h0z_B_A117_C118NANNANT01.01 AA08
1122h0z_B_C118_U119AAAAA00850.21 AA00
1132h0z_B_U119_G120AAAAA00770.18 AA00
1142h0z_B_G120_U121AAAAA00920.13 AA00
1152h0z_B_U121_G122AAAAA00890.15 AA00
1162h0z_B_G122_G123AAAAA00910.16 AA00
1172h0z_B_G123_C124AAAAA00200.42 AA00
1182h0z_B_C124_A125AAAAA00460.33 AA00
1192h0z_B_A125_U126AAAAA00660.29 AA00
1202h0z_B_U126_A127NANNANT00.57 IC04
1212h0z_B_A127_G128AAAAA08820.32 AA08
1222h0z_B_G128_A129AAAAA00780.21 AA00
1232h0z_B_A129_G130NANNANT00.59 OP04
1242h0z_B_G130_C131OPNOPS1240.75 OPS1
1252h0z_B_C131_A132AAAAA00790.20 AA00
1262h0z_B_A132_G133AAAAA00940.11 AA00
1272h0z_B_G133_U134AAAAA00900.11 AA00
1282h0z_B_U134_C135AAAAA00910.17 AA00
1292h0z_B_C135_C136AAAAA00900.16 AA00
1302h0z_B_C136_G137AAAAA00230.47 AA00
1312h0z_B_G137_G138ICLIC03770.41 IC03
1322h0z_B_G138_G139NANNANT01.82 OP12
1332h0z_B_G139_C140AAAAA04600.30 AA04
1342h0z_B_C140_A141AAAAA00770.16 AA00
1352h0z_B_A141_G142AAAAA00980.11 AA00
1362h0z_B_G142_G143AAAAA00830.19 AA00
1372h0z_B_G143_A144AAAAA00920.20 AA00
1382h0z_B_A144_A145AAwAA01360.46 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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