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Conformers: ABBIImiBZICOPNSYNN
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Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Results of the assignment of 137 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012h0w_A_G1_C2NANNANT00.85 OP27
0022h0w_A_C2_G3AAAAA00250.33 AA00
0032h0w_A_G3_C4AAAAA00900.19 AA00
0042h0w_A_C4_C5NANNANT00.28 AA10
0052h0w_A_G7_G8AAAAA00530.36 AA00
0062h0w_A_G8_A9AAAAA00750.28 AA00
0072h0w_A_A9_C10AAAAA08900.09 AA08
0082h0w_A_C10_U11AAAAA00760.24 AA00
0092h0w_A_U11_U12AAAAA00930.15 AA00
0102h0w_A_U12_A13AAAAA00960.12 AA00
0112h0w_A_A13_A14AAAAA00930.11 AA00
0122h0w_A_A14_A15AAAAA00890.10 AA00
0132h0w_A_A15_G16AAAAA00840.15 AA00
0142h0w_A_G16_C17AAAAA00910.09 AA00
0152h0w_A_C17_C18AAAAA00950.14 AA00
0162h0w_A_C18_A19AAAAA00830.17 AA00
0172h0w_A_A19_U20AAAAA00550.24 AA00
0182h0w_B_G23_G24AAAAA00910.10 AA00
0192h0w_B_G24_C25AAAAA00880.17 AA00
0202h0w_B_C25_U26AAAAA00890.13 AA00
0212h0w_B_U26_U27AAAAA00930.14 AA00
0222h0w_B_U27_U28AAAAA00830.18 AA00
0232h0w_B_U28_A29AAAAA00950.13 AA00
0242h0w_B_A29_A30AAAAA00850.13 AA00
0252h0w_B_A30_G31AAwAA01920.12 AA01
0262h0w_B_G31_U32AAAAA00560.26 AA00
0272h0w_B_U32_U33AAAAA00890.24 AA00
0282h0w_B_U33_G34AAAAA08630.36 AA08
0292h0w_B_G34_A35NANNANT01.10 OP28
0302h0w_B_A35_C36NANNANT00.49 OP26
0312h0w_B_C36_G37AAwAA06770.25 AA06
0322h0w_B_G37_A38AAAAA00740.17 AA00
0332h0w_B_A38_G39AAAAA00850.29 AA00
0342h0w_B_G39_G40AAAAA00870.16 AA00
0352h0w_B_G40_G41ICLIC01820.26 IC01
0362h0w_B_G41_C42NANNANT00.56 OP13
0372h0w_B_C42_A43AAAAA00800.22 AA00
0382h0w_B_A43_G44AAAAA00930.11 AA00
0392h0w_B_G44_G45AAAAA00920.10 AA00
0402h0w_B_G45_G46AAAAA00940.16 AA00
0412h0w_B_G46_U47AAAAA00820.28 AA00
0422h0w_B_U47_U48A-BAB01120.37 AB01
0432h0w_B_U48_U49NANNANT01.30 OP13
0442h0w_B_U49_A50NANNANT00.60 OP13
0452h0w_B_A50_U51NANNANT00.76 OP16
0462h0w_B_U51_C52AAAAA00840.15 AA00
0472h0w_B_C52_G53NANNANT00.44 AA08
0482h0w_B_G53_A54AAAAA00330.32 AA00
0492h0w_B_A54_G55NANNANT01.40 OP29
0502h0w_B_G55_A56NANNANT00.89 OPS1
0512h0w_B_A56_C57A-BAB04140.37 AB04
0522h0w_B_C57_A58NANNANT02.04 OP09
0532h0w_B_A58_U59NANNANT00.74 OP21
0542h0w_B_U59_C60NANNANT00.67 OP11
0552h0w_B_C60_G61AAAAA00580.38 AA00
0562h0w_B_G61_G62AAAAA00960.07 AA00
0572h0w_B_G62_C63AAAAA00940.07 AA00
0582h0w_B_C63_G64AAAAA00910.18 AA00
0592h0w_B_G64_G65AAAAA00770.25 AA00
0602h0w_B_G65_G66AAAAA00820.29 AA00
0612h0w_B_G66_U67OPNOP09100.32 OP09
0622h0w_B_U67_G68NANNANT00.67 OP12
0632h0w_B_G68_C69AAAAA00710.25 AA00
0642h0w_B_C69_C70AAAAA00810.20 AA00
0652h0w_B_C70_C71AAAAA00960.13 AA00
0662h0w_B_C71_U72AAAAA00920.15 AA00
0672h0w_B_U72_G73AAAAA00940.11 AA00
0682h0w_B_G73_C74AAAAA00850.14 AA00
0692h0w_B_C74_G75AAAAA00910.15 AA00
0702h0w_B_G75_G76AAAAA00860.14 AA00
0712h0w_B_G76_U77AAAAA00960.09 AA00
0722h0w_B_U77_C78AAAAA00950.16 AA00
0732h0w_B_C78_U79NANNANT01.12 OP05
0742h0w_B_U79_U80NANNANT00.74 OP26
0752h0w_B_U80_C81AAAAA00940.15 AA00
0762h0w_B_C81_C82AAAAA00890.18 AA00
0772h0w_B_C82_U83AAAAA00800.18 AA00
0782h0w_B_U83_G84AAAAA00850.14 AA00
0792h0w_B_G84_C85AAAAA00930.12 AA00
0802h0w_B_C85_G86AAAAA00920.17 AA00
0812h0w_B_G86_A87AAAAA00880.14 AA00
0822h0w_B_A87_C88AAAAA00890.09 AA00
0832h0w_B_C88_C89AAwAA01850.17 AA01
0842h0w_B_C89_G90A-BAB05740.27 AB05
0852h0w_B_G90_U91OPNOP22560.59 OP22
0862h0w_B_U91_U92OPNOP21430.47 OP21
0872h0w_B_U92_A93NANNANT00.38 OP11
0882h0w_B_A93_G94NANNANT00.82 OP30
0892h0w_B_G94_A95B-ABA08440.60 BA08
0902h0w_B_A95_G96AAAAA08270.43 AA08
0912h0w_B_G96_G97AAAAA00840.18 AA00
0922h0w_B_G97_A98AAAAA00950.11 AA00
0932h0w_B_A98_C99AAAAA00860.13 AA00
0942h0w_B_C99_U100AAAAA00950.15 AA00
0952h0w_B_U100_G101AAAAA00650.36 AA00
0962h0w_B_G101_G102NANNANT00.51 AB01
0972h0w_B_A104_A105AAwAA01630.37 AA01
0982h0w_B_A105_A106AAAAA08890.22 AA08
0992h0w_B_A106_A107AAAAA08120.60 AA08
1002h0w_B_A107_C108AAAAA0870.66 AA08
1012h0w_B_C108_C109AAAAA00950.09 AA00
1022h0w_B_C109_A110AAAAA00950.13 AA00
1032h0w_B_A110_C111AAAAA00940.11 AA00
1042h0w_B_C111_A112AAAAA00910.14 AA00
1052h0w_B_A112_G113AAAAA00800.19 AA00
1062h0w_B_G113_G114AAAAA00900.18 AA00
1072h0w_B_G114_C115OPNOP03810.34 OP03
1082h0w_B_C115_G116AAAAA08440.45 AA08
1092h0w_B_G116_A117AAAAA02590.22 AA02
1102h0w_B_A117_C118NANNANT01.05 AA08
1112h0w_B_C118_U119AAAAA00890.20 AA00
1122h0w_B_U119_G120AAAAA00880.16 AA00
1132h0w_B_G120_U121AAAAA00960.13 AA00
1142h0w_B_U121_G122AAAAA00880.13 AA00
1152h0w_B_G122_G123AAAAA00940.13 AA00
1162h0w_B_G123_C124AAAAA00920.18 AA00
1172h0w_B_C124_A125AAuAA12890.20 AA12
1182h0w_B_A125_U126AAAAA00640.32 AA00
1192h0w_B_U126_A127NANNANT00.59 IC04
1202h0w_B_A127_G128AAAAA08790.29 AA08
1212h0w_B_G128_A129AAAAA00730.20 AA00
1222h0w_B_A129_G130NANNANT00.66 OP04
1232h0w_B_G130_C131OPNOPS1440.66 OPS1
1242h0w_B_C131_A132AAAAA00770.22 AA00
1252h0w_B_A132_G133AAAAA00930.11 AA00
1262h0w_B_G133_U134AAAAA00980.10 AA00
1272h0w_B_U134_C135AAAAA00880.16 AA00
1282h0w_B_C135_C136AAAAA00970.12 AA00
1292h0w_B_C136_G137AAAAA00210.44 AA00
1302h0w_B_G137_G138ICLIC03660.46 IC03
1312h0w_B_G138_G139NANNANT01.79 OP12
1322h0w_B_G139_C140AAAAA04740.25 AA04
1332h0w_B_C140_A141AAAAA00870.15 AA00
1342h0w_B_A141_G142AAAAA00930.15 AA00
1352h0w_B_G142_G143AAAAA00820.24 AA00
1362h0w_B_G143_A144AAAAA00870.22 AA00
1372h0w_B_A144_A23145NANNANT00.73 IC06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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