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Conformers: ABBIImiBZICOPNSYNN
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Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Results of the assignment of 139 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012h0s_A_A-2_DA-1NANNANT01.01 AA11
0022h0s_A_DA-1_G1NANNANT01.58 OP23
0032h0s_A_G1_C2NANNANT00.79 OP27
0042h0s_A_C2_G3AAAAA00450.27 AA00
0052h0s_A_G3_C4AAAAA00920.16 AA00
0062h0s_A_C4_C5AAAAA04480.33 AA04
0072h0s_A_G7_G8AAAAA00520.34 AA00
0082h0s_A_G8_A9AAAAA00700.31 AA00
0092h0s_A_A9_C10AAAAA00790.19 AA00
0102h0s_A_C10_U11AAAAA00780.27 AA00
0112h0s_A_U11_IU12AAAAA00940.15 AA00
0122h0s_A_IU12_A13AAAAA00920.13 AA00
0132h0s_A_A13_A14AAAAA00930.10 AA00
0142h0s_A_A14_A15AAAAA00850.13 AA00
0152h0s_A_A15_G16AAAAA00970.09 AA00
0162h0s_A_G16_C17AAAAA00870.14 AA00
0172h0s_A_C17_C18AAAAA00800.19 AA00
0182h0s_A_C18_A19AAAAA00700.22 AA00
0192h0s_A_A19_U20AAAAA00510.31 AA00
0202h0s_B_G23_G24AAAAA00930.12 AA00
0212h0s_B_G24_C25AAAAA00740.15 AA00
0222h0s_B_C25_U26AAAAA00910.16 AA00
0232h0s_B_U26_U27AAAAA00990.10 AA00
0242h0s_B_U27_U28AAAAA00920.13 AA00
0252h0s_B_U28_A29AAAAA00810.14 AA00
0262h0s_B_A29_A30AAAAA00850.15 AA00
0272h0s_B_A30_G31AAwAA10620.15 AA10
0282h0s_B_G31_U32AAAAA00760.18 AA00
0292h0s_B_U32_U33AAAAA00900.24 AA00
0302h0s_B_U33_G34AAAAA08680.39 AA08
0312h0s_B_G34_A35NANNANT01.10 OP28
0322h0s_B_A35_C36NANNANT00.48 OP26
0332h0s_B_C36_G37AAwAA06630.30 AA06
0342h0s_B_G37_A38AAAAA00490.22 AA00
0352h0s_B_A38_G39AAAAA00620.35 AA00
0362h0s_B_G39_G40AAAAA00640.18 AA00
0372h0s_B_G40_G41ICLIC01760.26 IC01
0382h0s_B_G41_C42NANNANT00.57 OP13
0392h0s_B_C42_A43AAAAA00540.28 AA00
0402h0s_B_A43_G44AAAAA00920.11 AA00
0412h0s_B_G44_G45AAAAA00940.09 AA00
0422h0s_B_G45_G46AAAAA00940.16 AA00
0432h0s_B_G46_U47AAAAA00930.21 AA00
0442h0s_B_U47_U48A-BAB01240.30 AB01
0452h0s_B_U48_U49NANNANT00.60 OP29
0462h0s_B_U49_A50NANNANT00.98 OP30
0472h0s_B_A50_U51NANNANT00.74 OP10
0482h0s_B_U51_C52AAAAA00850.14 AA00
0492h0s_B_C52_G53NANNANT00.46 AA08
0502h0s_B_G53_A54AAAAA00350.31 AA00
0512h0s_B_A54_G55NANNANT00.80 OP03
0522h0s_B_G55_A56NANNANT00.78 OPS1
0532h0s_B_A56_C57NANNANT00.35 AB04
0542h0s_B_C57_A58NANNANT02.08 OP09
0552h0s_B_A58_U59NANNANT00.69 OP21
0562h0s_B_U59_C60NANNANT00.74 OP11
0572h0s_B_C60_G61AAAAA00710.37 AA00
0582h0s_B_G61_G62AAAAA00840.13 AA00
0592h0s_B_G62_C63AAAAA00900.10 AA00
0602h0s_B_C63_G64AAAAA00940.18 AA00
0612h0s_B_G64_G65AAAAA00620.27 AA00
0622h0s_B_G65_G66AAAAA00620.27 AA00
0632h0s_B_G66_U67NANNANT00.81 OP04
0642h0s_B_U67_G68NANNANT01.63 OP16
0652h0s_B_G68_C69AAAAA00800.25 AA00
0662h0s_B_C69_C70AAAAA00810.21 AA00
0672h0s_B_C70_C71AAAAA00960.12 AA00
0682h0s_B_C71_U72AAAAA00950.13 AA00
0692h0s_B_U72_G73AAAAA00970.10 AA00
0702h0s_B_G73_C74AAAAA00840.15 AA00
0712h0s_B_C74_G75AAAAA00930.18 AA00
0722h0s_B_G75_G76AAAAA00860.14 AA00
0732h0s_B_G76_U77AAAAA00740.13 AA00
0742h0s_B_U77_C78AAAAA00890.22 AA00
0752h0s_B_C78_U79NANNANT01.04 OP05
0762h0s_B_U79_U80NANNANT00.91 OP26
0772h0s_B_U80_C81AAAAA00890.12 AA00
0782h0s_B_C81_C82AAAAA00880.18 AA00
0792h0s_B_C82_U83AAAAA00920.14 AA00
0802h0s_B_U83_G84AAAAA00900.15 AA00
0812h0s_B_G84_C85AAAAA00960.10 AA00
0822h0s_B_C85_G86AAAAA00900.18 AA00
0832h0s_B_G86_A87AAAAA00950.15 AA00
0842h0s_B_A87_C88AAAAA00950.13 AA00
0852h0s_B_C88_C89AAwAA01710.22 AA01
0862h0s_B_C89_G90A-BAB05660.30 AB05
0872h0s_B_G90_U91NANNANT00.65 OP22
0882h0s_B_U91_U92NANNANT00.57 OP21
0892h0s_B_U92_A93OPNOP11350.45 OP11
0902h0s_B_A93_G94NANNANT00.79 OP30
0912h0s_B_G94_A95B-ABA08390.59 BA08
0922h0s_B_A95_G96AAAAA04380.49 AA04
0932h0s_B_G96_G97AAAAA00690.23 AA00
0942h0s_B_G97_A98AAAAA00900.13 AA00
0952h0s_B_A98_C99AAAAA00880.14 AA00
0962h0s_B_C99_U100AAAAA00880.18 AA00
0972h0s_B_U100_G101AAAAA00680.31 AA00
0982h0s_B_G101_G102A-BAB01110.50 AB01
0992h0s_B_A104_A105AAwAA01630.36 AA01
1002h0s_B_A105_A106AAAAA00740.22 AA00
1012h0s_B_A106_A107NANNANT00.70 AA04
1022h0s_B_A107_C108NANNANT00.75 AA04
1032h0s_B_C108_C109AAAAA00960.10 AA00
1042h0s_B_C109_A110AAAAA00960.14 AA00
1052h0s_B_A110_C111AAAAA00820.11 AA00
1062h0s_B_C111_A112AAAAA00900.14 AA00
1072h0s_B_A112_G113AAAAA00850.17 AA00
1082h0s_B_G113_G114AAAAA00870.17 AA00
1092h0s_B_G114_C115OPNOP03790.30 OP03
1102h0s_B_C115_G116AAAAA08340.41 AA08
1112h0s_B_G116_A117AAAAA02680.20 AA02
1122h0s_B_A117_C118NANNANT01.07 AA04
1132h0s_B_C118_U119AAAAA00840.19 AA00
1142h0s_B_U119_G120AAAAA00880.14 AA00
1152h0s_B_G120_U121AAAAA00690.14 AA00
1162h0s_B_U121_G122AAAAA00940.11 AA00
1172h0s_B_G122_G123AAAAA00950.15 AA00
1182h0s_B_G123_C124AAAAA00900.19 AA00
1192h0s_B_C124_A125AAuAA12950.18 AA12
1202h0s_B_A125_U126AAAAA00640.32 AA00
1212h0s_B_U126_A127NANNANT00.75 IC07
1222h0s_B_A127_G128AAAAA08790.31 AA08
1232h0s_B_G128_A129AAAAA00680.21 AA00
1242h0s_B_A129_G130NANNANT00.63 OP04
1252h0s_B_G130_C131OPNOPS1300.71 OPS1
1262h0s_B_C131_A132AAAAA00710.22 AA00
1272h0s_B_A132_G133AAAAA00820.23 AA00
1282h0s_B_G133_U134AAAAA00890.16 AA00
1292h0s_B_U134_C135AAAAA00940.14 AA00
1302h0s_B_C135_C136AAAAA00910.20 AA00
1312h0s_B_C136_G137AAAAA00290.47 AA00
1322h0s_B_G137_G138ICLIC03670.43 IC03
1332h0s_B_G138_G139NANNANT00.92 AA13
1342h0s_B_G139_C140AAAAA00600.22 AA00
1352h0s_B_C140_A141AAAAA00910.23 AA00
1362h0s_B_A141_G142AAAAA00830.18 AA00
1372h0s_B_G142_G143AAAAA00920.14 AA00
1382h0s_B_G143_A144AAAAA00780.29 AA00
1392h0s_B_A144_A23145NANNANT00.66 IC01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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