Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of a complex of tandem HMG boxes and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2gzk_B_DG201_DG202 | B-A | BA05 | 30 | 0.36 |
| 02 | 2gzk_B_DG202_DG203 | NAN | NANT | 0 | 0.77 |
| 03 | 2gzk_B_DG203_DA204 | BBB | BB00 | 48 | 0.56 |
| 04 | 2gzk_B_DA204_DT205 | NAN | NANT | 0 | 0.64 |
| 05 | 2gzk_B_DT205_DC206 | BBB | BB00 | 27 | 0.37 |
| 06 | 2gzk_B_DC206_DT207 | B12 | BB04 | 28 | 0.23 |
| 07 | 2gzk_B_DT207_DA208 | B12 | BB04 | 26 | 0.33 |
| 08 | 2gzk_B_DA208_DA209 | B12 | BB04 | 63 | 0.33 |
| 09 | 2gzk_B_DA209_DA210 | BBB | BB00 | 64 | 0.20 |
| 10 | 2gzk_B_DA210_DC211 | B12 | BB04 | 11 | 0.49 |
| 11 | 2gzk_B_DC211_DA212 | NAN | NANT | 0 | 0.62 |
| 12 | 2gzk_B_DA212_DA213 | A-B | AB01 | 13 | 0.40 |
| 13 | 2gzk_B_DA213_DT214 | B12 | BB04 | 49 | 0.22 |
| 14 | 2gzk_B_DT214_DG215 | BBw | BB16 | 38 | 0.34 |
| 15 | 2gzk_B_DG215_DC216 | NAN | NANT | 0 | 0.40 |
| 16 | 2gzk_C_DG217_DC218 | BBB | BB00 | 34 | 0.37 |
| 17 | 2gzk_C_DC218_DA219 | NAN | NANT | 0 | 0.52 |
| 18 | 2gzk_C_DA219_DT220 | AAA | AA02 | 35 | 0.30 |
| 19 | 2gzk_C_DT220_DT221 | A-B | AB05 | 9 | 0.34 |
| 20 | 2gzk_C_DT221_DG222 | BBB | BB00 | 64 | 0.37 |
| 21 | 2gzk_C_DG222_DT223 | B12 | BB04 | 22 | 0.29 |
| 22 | 2gzk_C_DT223_DT224 | BBB | BB00 | 12 | 0.44 |
| 23 | 2gzk_C_DT224_DT225 | BBB | BB00 | 28 | 0.30 |
| 24 | 2gzk_C_DT225_DA226 | B12 | BB04 | 32 | 0.35 |
| 25 | 2gzk_C_DA226_DG227 | NAN | NANT | 0 | 0.53 |
| 26 | 2gzk_C_DG227_DA228 | BBB | BB00 | 22 | 0.30 |
| 27 | 2gzk_C_DA228_DT229 | NAN | NANT | 0 | 0.51 |
| 28 | 2gzk_C_DT229_DC230 | NAN | NANT | 0 | 0.55 |
| 29 | 2gzk_C_DC230_DC231 | AAA | AA02 | 26 | 0.33 |
| 30 | 2gzk_C_DC231_DC232 | AAA | AA02 | 59 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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