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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of an RNA Quadruplex Containing Inosine-tetrad

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012grb_A_G4_G5AAAAA00870.18 AA00
022grb_A_G5_U6ZZZZZ01680.17 ZZ01
032grb_B_G4_G5AAAAA00880.15 AA00
042grb_B_G5_U6ZZZZZ01790.19 ZZ01
052grb_C_G4_G5AAAAA00760.16 AA00
062grb_C_G5_U6ZZZZZ01600.18 ZZ01
072grb_D_G4_G5AAAAA00860.17 AA00
082grb_D_G5_U6ZZZZZ01620.19 ZZ01
092grb_E_G4_G5AAAAA00860.20 AA00
102grb_E_G5_U6ZZZZZ01620.20 ZZ01
112grb_F_G4_G5AAAAA00840.19 AA00
122grb_F_G5_U6ZZZZZ01640.19 ZZ01
132grb_G_G4_G5AAAAA08780.26 AA08
142grb_G_G5_U6ZZZZZ01650.18 ZZ01
152grb_H_G4_G5AAAAA00860.17 AA00
162grb_H_G5_U6ZZZZZ01560.19 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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