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Conformers: ABBIImiBZICOPNSYNN
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An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNA

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012gm4_X_DC2_DA3NANNANT00.91 IC01
022gm4_X_DA3_DG4NANNANT00.56 BB14
032gm4_X_DG4_DT5BBBBB00770.27 BB00
042gm4_X_DT5_DG6BBBBB01180.23 BB01
052gm4_X_DG6_DT7BBBBB00130.48 BB00
062gm4_X_DT7_DC8BBBBB00350.32 BB00
072gm4_X_DC8_DC9NANNANT00.52 BA09
082gm4_X_DC9_DG10NANNANT00.67 AB02
092gm4_X_DG10_DA11miBBB10810.26 BB10
102gm4_X_DA11_DT12NANNANT00.92 BB16
112gm4_X_DT12_DA13BBwBB17760.26 BB17
122gm4_X_DA13_DA14miBBB10620.41 BB10
132gm4_X_DA14_DT15B-ABA10510.29 BA10
142gm4_X_DT15_DT16AAAAA02250.29 AA02
152gm4_X_DT16_DT17A-BAB01430.28 AB01
162gm4_X_DT17_DA18B-ABA10740.42 BA10
172gm4_X_DA18_DT19NANNANT00.51 AA11
182gm4_Z_DA20_DA21BBBBB00100.35 BB00
192gm4_Z_DA21_DA22B-ABA08580.35 BA08
202gm4_Y_DT23_DT24NANNANT00.63 AA06
212gm4_Y_DT24_DA25BBwBB0270.41 BB02
222gm4_Y_DA25_DT26NANNANT00.43 BA10
232gm4_Y_DT26_DC27NANNANT00.49 AA04
242gm4_Y_DC27_DG28AAwAA06710.46 AA06
252gm4_Y_DG28_DG29AAwAA11210.53 AA11
262gm4_Y_DG29_DA30NANNANT00.61 BB17
272gm4_Y_DA30_DC31NANNANT00.75 BB02
282gm4_Y_DC31_DA32NANNANT00.42 BB10
292gm4_Y_DA32_DC33B12BB05490.20 BB05
302gm4_Y_DC33_DT34NANNANT00.66 BA10
312gm4_Y_DT34_DG35AAwAA11170.64 AA11
322gm4_J_DA3_DG4NANNANT00.51 BB17
332gm4_J_DG4_DT5BB2BB07300.37 BB07
342gm4_J_DT5_DG6NANNANT00.52 BB11
352gm4_J_DG6_DT7A-BAB01220.46 AB01
362gm4_J_DT7_DC8miBBB10450.39 BB10
372gm4_J_DC8_DC9NANNANT00.53 BB13
382gm4_J_DC9_DG10NANNANT00.64 BB17
392gm4_J_DG10_DA11B12BB04440.30 BB04
402gm4_J_DA11_DT12BBBBB00210.29 BB00
412gm4_J_DT12_DA13BBBBB00680.26 BB00
422gm4_J_DA13_DA14BBBBB01430.35 BB01
432gm4_J_DA14_DT15B-ABA10810.25 BA10
442gm4_J_DT15_DT16AAAAA09150.27 AA09
452gm4_J_DT16_DT17AAAAA02470.33 AA02
462gm4_J_DT17_DA18AAAAA02510.25 AA02
472gm4_J_DA18_DT19NANNANT00.53 AA11
482gm4_I_DA20_DA21A-BAB03750.37 AB03
492gm4_I_DA21_DA22NANNANT00.52 BA05
502gm4_K_DT23_DT24NANNANT00.67 AA06
512gm4_K_DT24_DA25NANNANT00.62 BB02
522gm4_K_DA25_DT26NANNANT00.43 BA10
532gm4_K_DT26_DC27NANNANT00.42 AA04
542gm4_K_DC27_DG28AAwAA06630.44 AA06
552gm4_K_DG28_DG29AAwAA11220.52 AA11
562gm4_K_DG29_DA30NANNANT00.45 AB03
572gm4_K_DA30_DC31NANNANT00.68 BB13
582gm4_K_DC31_DA32NANNANT00.56 AB02
592gm4_K_DA32_DC33NANNANT00.46 BA10
602gm4_K_DC33_DT34NANNANT00.53 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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