Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
FIVE-FINGER GLI/DNA COMPLEX

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012gli_C_DT1_DT2NANNANT00.53 AA03
022gli_C_DT2_DT3NANNANT00.59 BB14
032gli_C_DT3_DC4NANNANT00.53 AA10
042gli_C_DC4_DG5NANNANT00.66 AB02
052gli_C_DG5_DT6miBBB10350.34 BB10
062gli_C_DT6_DC7NANNANT00.46 BB14
072gli_C_DC7_DT8BBBBB00350.21 BB00
082gli_C_DT8_DT9BBBBB00750.23 BB00
092gli_C_DT9_DG10BBBBB00420.30 BB00
102gli_C_DG10_DG11NANNANT00.41 BA08
112gli_C_DG11_DG12AAwAA01300.41 AA01
122gli_C_DG12_DT13NANNANT00.36 AB04
132gli_C_DT13_DG14NANNANT00.49 BB17
142gli_C_DG14_DG15NANNANT00.51 AA01
152gli_C_DG15_DT16AAwAA06160.48 AA06
162gli_C_DT16_DC17NANNANT00.77 AB02
172gli_C_DC17_DC18NANNANT00.50 BB07
182gli_C_DC18_DA19NANNANT00.66 AB02
192gli_C_DA19_DC20NANNANT00.32 AB02
202gli_C_DC20_DG21NANNANT01.03 OP24
212gli_D_DA1_DC2miBBB14760.43 BB14
222gli_D_DC2_DG3NANNANT00.50 BB07
232gli_D_DG3_DT4NANNANT00.51 BB14
242gli_D_DT4_DG5NANNANT00.54 BB10
252gli_D_DG5_DG6NANNANT00.46 BB15
262gli_D_DG6_DA7NANNANT00.32 BB07
272gli_D_DA7_DC8NANNANT00.33 BB15
282gli_D_DC8_DC9NANNANT00.32 BB02
292gli_D_DC9_DA10NANNANT00.46 BA08
302gli_D_DA10_DC11B-ABA01100.33 BA01
312gli_D_DC11_DC12NANNANT00.68 AA00
322gli_D_DC12_DC13NANNANT00.64 AA04
332gli_D_DC13_DA14NANNANT01.05 OP24
342gli_D_DA14_DA15NANNANT00.56 AA01
352gli_D_DA15_DG16NANNANT00.48 AB02
362gli_D_DG16_DA17NANNANT00.69 BB02
372gli_D_DA17_DC18NANNANT00.40 BB10
382gli_D_DC18_DG19BB2BB07170.40 BB07
392gli_D_DG19_DA20NANNANT00.37 AB03
402gli_D_DA20_DA21NANNANT00.53 BA13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N