DNATCO v4.1: results

Structure of the S-adenosylmethionine riboswitch mRNA regulatory element

Results of the assignment of 93 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2gis_A_G1_G2	AAA	AA00	72	0.17	AA00
02	2gis_A_G2_C3	AAA	AA00	68	0.20	AA00
03	2gis_A_C3_U4	AAA	AA00	93	0.15	AA00
04	2gis_A_U4_U5	AAA	AA00	86	0.19	AA00
05	2gis_A_U5_A6	AAA	AA00	86	0.17	AA00
06	2gis_A_A6_U7	AAA	AA00	56	0.14	AA00
07	2gis_A_U7_C8	AAA	AA00	49	0.22	AA00
08	2gis_A_C8_A9	NAN	NANT	0	0.59	OP30
09	2gis_A_A9_A10	NAN	NANT	0	2.20	OP15
10	2gis_A_A10_G11	AAA	AA08	68	0.28	AA08
11	2gis_A_G11_A12	AAA	AA09	63	0.21	AA09
12	2gis_A_A12_G13	NAN	NANT	0	0.92	IC07
13	2gis_A_G13_A14	NAN	NANT	0	0.68	OP30
14	2gis_A_A14_G15	NAN	NANT	0	2.06	OP16
15	2gis_A_G15_G16	NAN	NANT	0	0.55	AA06
16	2gis_A_G16_U17	AAA	AA00	48	0.32	AA00
17	2gis_A_U17_G18	AAA	AA00	15	0.46	AA00
18	2gis_A_G18_G19	AAw	AA11	46	0.49	AA11
19	2gis_A_G19_A20	AAu	AA12	31	0.38	AA12
20	2gis_A_A20_G21	NAN	NANT	0	1.20	AA01
21	2gis_A_G21_G22	AAA	AA00	84	0.25	AA00
22	2gis_A_G22_G23	AAA	AA00	74	0.27	AA00
23	2gis_A_G23_A24	NAN	NANT	0	1.53	OP06
24	2gis_A_A24_C25	AAA	AA00	34	0.26	AA00
25	2gis_A_C25_U26	AAA	AA04	21	0.55	AA04
26	2gis_A_U26_G27	AAA	AA00	60	0.30	AA00
27	2gis_A_G27_G28	NAN	NANT	0	0.27	AA10
28	2gis_A_G28_C29	AAA	AA08	58	0.36	AA08
29	2gis_A_C29_C30	AAw	AA01	92	0.19	AA01
30	2gis_A_C30_C31	AAA	AA00	68	0.22	AA00
31	2gis_A_C31_G32	AAA	AA00	67	0.22	AA00
32	2gis_A_G32_A33	NAN	NANT	0	1.27	BB2S
33	2gis_A_A33_U34	NAN	NANT	0	2.38	AA13
34	2gis_A_U34_G35	NAN	NANT	0	1.10	OP01
35	2gis_A_G35_A36	AAu	AA13	23	0.48	AA13
36	2gis_A_A36_A37	AAA	AA00	19	0.34	AA00
37	2gis_A_A37_A38	AAA	AA04	34	0.48	AA04
38	2gis_A_A38_C39	AAA	AA00	93	0.12	AA00
39	2gis_A_C39_C40	AAA	AA00	92	0.22	AA00
40	2gis_A_C40_C41	AAA	AA08	58	0.31	AA08
41	2gis_A_C41_G42	AAA	AA00	67	0.30	AA00
42	2gis_A_G42_G43	AAA	AA00	77	0.22	AA00
43	2gis_A_G43_C44	AAA	AA00	68	0.25	AA00
44	2gis_A_C44_A45	AAA	AA00	24	0.42	AA00
45	2gis_A_A45_A46	AAA	AA00	12	0.35	AA00
46	2gis_A_A46_C47	NAN	NANT	0	0.46	OP26
47	2gis_A_C47_C48	AAA	AA00	61	0.26	AA00
48	2gis_A_C48_A49	AAA	AA00	97	0.15	AA00
49	2gis_A_A49_G50	NAN	NANT	0	0.60	BB02
50	2gis_A_G50_A51	NAN	NANT	0	0.46	OP03
51	2gis_A_A51_A52	AAw	AA06	59	0.42	AA06
52	2gis_A_A52_A53	NAN	NANT	0	0.57	AA04
53	2gis_A_A53_U54	AAA	AA08	19	0.68	AA08
54	2gis_A_U54_G55	AAA	AA00	84	0.15	AA00
55	2gis_A_G55_G56	AAA	AA00	67	0.26	AA00
56	2gis_A_G56_U57	NAN	NANT	0	0.36	AA10
57	2gis_A_U57_G58	AAA	AA08	20	0.56	AA08
58	2gis_A_G58_C59	AAA	AA08	88	0.16	AA08
59	2gis_A_C59_C60	AAA	AA00	61	0.22	AA00
60	2gis_A_C60_A61	NAN	NANT	0	1.02	OP30
61	2gis_A_A61_A62	AAA	AA00	72	0.27	AA00
62	2gis_A_A62_U63	NAN	NANT	0	0.55	OP05
63	2gis_A_U63_U64	NAN	NANT	0	1.19	OP05
64	2gis_A_U64_C65	NAN	NANT	0	0.87	OP14
65	2gis_A_C65_C66	AAA	AA00	91	0.14	AA00
66	2gis_A_C66_U67	AAA	AA00	59	0.32	AA00
67	2gis_A_U67_G68	AAA	AA04	47	0.30	AA04
68	2gis_A_G68_C69	NAN	NANT	0	1.50	AA07
69	2gis_A_C69_A70	AAA	AA00	92	0.12	AA00
70	2gis_A_A70_G71	AAA	AA00	38	0.29	AA00
71	2gis_A_G71_C72	AAA	AA00	92	0.11	AA00
72	2gis_A_C72_G73	AAA	AA00	77	0.24	AA00
73	2gis_A_G73_G74	NAN	NANT	0	0.76	AA11
74	2gis_A_G74_A75	NAN	NANT	0	0.36	OP03
75	2gis_A_A75_A76	AAA	AA00	51	0.32	AA00
76	2gis_A_A76_A77	AAA	AA00	39	0.32	AA00
77	2gis_A_A77_C78	NAN	NANT	0	0.76	AA08
78	2gis_A_C78_G79	AAA	AA00	87	0.17	AA00
79	2gis_A_G79_U80	AAA	AA00	85	0.16	AA00
80	2gis_A_U80_U81	AAA	AA00	77	0.20	AA00
81	2gis_A_U81_G82	AAA	AA00	79	0.22	AA00
82	2gis_A_G82_A83	AAw	AA01	73	0.15	AA01
83	2gis_A_A83_A84	AAA	AA00	33	0.37	AA00
84	2gis_A_A84_A85	AAA	AA00	66	0.28	AA00
85	2gis_A_A85_G86	AAA	AA00	75	0.19	AA00
86	2gis_A_G86_A87	AAA	AA00	77	0.16	AA00
87	2gis_A_A87_U88	AAA	AA00	80	0.15	AA00
88	2gis_A_U88_G89	AAA	AA00	82	0.15	AA00
89	2gis_A_G89_A90	AAA	AA00	80	0.21	AA00
90	2gis_A_A90_G91	AAA	AA00	89	0.10	AA00
91	2gis_A_G91_C92	AAw	AA01	71	0.18	AA01
92	2gis_A_C92_C93	AAA	AA00	51	0.27	AA00
93	2gis_A_C93_A94	AAA	AA00	43	0.23	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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N

Results of the assignment of 93 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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