DNATCO v4.1: results

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Results of the assignment of 137 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2gcv_A_G1_C2	NAN	NANT	0	0.89	OP27
002	2gcv_A_C2_G3	AAA	AA00	29	0.32	AA00
003	2gcv_A_G3_C4	AAA	AA00	90	0.18	AA00
004	2gcv_A_C4_C5	NAN	NANT	0	0.27	AA10
005	2gcv_A_G7_G8	AAA	AA00	58	0.38	AA00
006	2gcv_A_G8_A9	AAA	AA00	78	0.28	AA00
007	2gcv_A_A9_C10	AAA	AA00	87	0.16	AA00
008	2gcv_A_C10_U11	AAA	AA00	66	0.26	AA00
009	2gcv_A_U11_U12	AAA	AA00	92	0.13	AA00
010	2gcv_A_U12_A13	AAA	AA00	91	0.14	AA00
011	2gcv_A_A13_A14	AAA	AA00	84	0.15	AA00
012	2gcv_A_A14_A15	AAA	AA00	86	0.11	AA00
013	2gcv_A_A15_G16	AAA	AA00	87	0.15	AA00
014	2gcv_A_G16_C17	AAA	AA00	94	0.09	AA00
015	2gcv_A_C17_C18	AAA	AA00	94	0.15	AA00
016	2gcv_A_C18_A19	AAA	AA00	77	0.16	AA00
017	2gcv_A_A19_U20	AAA	AA00	41	0.27	AA00
018	2gcv_B_G23_G24	AAA	AA00	88	0.12	AA00
019	2gcv_B_G24_C25	AAA	AA00	90	0.12	AA00
020	2gcv_B_C25_U26	AAA	AA00	88	0.16	AA00
021	2gcv_B_U26_U27	AAA	AA00	96	0.10	AA00
022	2gcv_B_U27_U28	AAA	AA00	84	0.15	AA00
023	2gcv_B_U28_A29	AAA	AA00	91	0.13	AA00
024	2gcv_B_A29_A30	AAA	AA00	88	0.11	AA00
025	2gcv_B_A30_G31	AAw	AA01	93	0.14	AA01
026	2gcv_B_G31_U32	AAA	AA00	66	0.23	AA00
027	2gcv_B_U32_U33	AAA	AA00	85	0.25	AA00
028	2gcv_B_U33_G34	AAA	AA08	56	0.38	AA08
029	2gcv_B_G34_A35	NAN	NANT	0	1.10	OP28
030	2gcv_B_A35_C36	NAN	NANT	0	0.45	OP26
031	2gcv_B_C36_G37	AAw	AA06	65	0.30	AA06
032	2gcv_B_G37_A38	AAA	AA00	64	0.18	AA00
033	2gcv_B_A38_G39	AAA	AA00	83	0.30	AA00
034	2gcv_B_G39_G40	AAA	AA00	82	0.20	AA00
035	2gcv_B_G40_G41	ICL	IC01	77	0.27	IC01
036	2gcv_B_G41_C42	NAN	NANT	0	0.58	OP13
037	2gcv_B_C42_A43	AAA	AA00	76	0.22	AA00
038	2gcv_B_A43_G44	AAA	AA00	89	0.10	AA00
039	2gcv_B_G44_G45	AAA	AA00	96	0.10	AA00
040	2gcv_B_G45_G46	AAA	AA00	86	0.18	AA00
041	2gcv_B_G46_U47	AAA	AA00	84	0.28	AA00
042	2gcv_B_U47_U48	NAN	NANT	0	0.24	AB05
043	2gcv_B_U48_U49	NAN	NANT	0	1.28	OP13
044	2gcv_B_U49_A50	NAN	NANT	0	0.58	OP13
045	2gcv_B_A50_U51	NAN	NANT	0	0.78	OP16
046	2gcv_B_U51_C52	AAA	AA00	91	0.15	AA00
047	2gcv_B_C52_G53	NAN	NANT	0	0.49	AA03
048	2gcv_B_G53_A54	AAA	AA00	24	0.36	AA00
049	2gcv_B_A54_G55	NAN	NANT	0	1.38	OP29
050	2gcv_B_G55_A56	NAN	NANT	0	0.91	OPS1
051	2gcv_B_A56_C57	A-B	AB04	12	0.37	AB04
052	2gcv_B_C57_A58	NAN	NANT	0	2.04	OP09
053	2gcv_B_A58_U59	NAN	NANT	0	0.73	OP21
054	2gcv_B_U59_C60	NAN	NANT	0	0.70	OP11
055	2gcv_B_C60_G61	AAA	AA00	72	0.35	AA00
056	2gcv_B_G61_G62	AAA	AA00	93	0.08	AA00
057	2gcv_B_G62_C63	AAA	AA00	88	0.07	AA00
058	2gcv_B_C63_G64	AAA	AA00	86	0.20	AA00
059	2gcv_B_G64_G65	AAA	AA00	78	0.26	AA00
060	2gcv_B_G65_G66	AAA	AA00	80	0.26	AA00
061	2gcv_B_G66_U67	OPN	OP09	18	0.40	OP09
062	2gcv_B_U67_G68	OPN	OP11	27	0.53	OP11
063	2gcv_B_G68_C69	AAA	AA00	80	0.25	AA00
064	2gcv_B_C69_C70	AAA	AA00	91	0.15	AA00
065	2gcv_B_C70_C71	AAA	AA00	97	0.10	AA00
066	2gcv_B_C71_U72	AAA	AA00	86	0.15	AA00
067	2gcv_B_U72_G73	AAA	AA00	96	0.10	AA00
068	2gcv_B_G73_C74	AAA	AA08	85	0.16	AA08
069	2gcv_B_C74_G75	AAA	AA00	90	0.16	AA00
070	2gcv_B_G75_G76	AAA	AA00	85	0.14	AA00
071	2gcv_B_G76_U77	AAA	AA00	94	0.09	AA00
072	2gcv_B_U77_C78	AAA	AA00	94	0.17	AA00
073	2gcv_B_C78_U79	NAN	NANT	0	1.12	OP05
074	2gcv_B_U79_U80	NAN	NANT	0	0.75	OP26
075	2gcv_B_U80_C81	AAA	AA00	94	0.15	AA00
076	2gcv_B_C81_C82	AAA	AA00	86	0.18	AA00
077	2gcv_B_C82_U83	AAA	AA00	94	0.15	AA00
078	2gcv_B_U83_G84	AAA	AA00	85	0.14	AA00
079	2gcv_B_G84_C85	AAA	AA00	91	0.13	AA00
080	2gcv_B_C85_G86	AAA	AA00	92	0.17	AA00
081	2gcv_B_G86_A87	AAA	AA00	90	0.12	AA00
082	2gcv_B_A87_C88	AAA	AA00	89	0.12	AA00
083	2gcv_B_C88_C89	AAw	AA01	86	0.16	AA01
084	2gcv_B_C89_G90	A-B	AB05	83	0.29	AB05
085	2gcv_B_G90_U91	OPN	OP22	42	0.59	OP22
086	2gcv_B_U91_U92	OPN	OP21	45	0.47	OP21
087	2gcv_B_U92_A93	OPN	OP11	43	0.37	OP11
088	2gcv_B_A93_G94	NAN	NANT	0	0.81	OP30
089	2gcv_B_G94_A95	B-A	BA08	38	0.62	BA08
090	2gcv_B_A95_G96	AAA	AA08	37	0.43	AA08
091	2gcv_B_G96_G97	AAA	AA00	85	0.20	AA00
092	2gcv_B_G97_A98	AAA	AA00	96	0.11	AA00
093	2gcv_B_A98_C99	AAA	AA00	76	0.18	AA00
094	2gcv_B_C99_U100	AAA	AA00	90	0.13	AA00
095	2gcv_B_U100_G101	AAA	AA00	69	0.37	AA00
096	2gcv_B_G101_G102	NAN	NANT	0	0.44	AB05
097	2gcv_B_A104_A105	AAw	AA01	30	0.43	AA01
098	2gcv_B_A105_A106	AAA	AA08	88	0.23	AA08
099	2gcv_B_A106_A107	AAA	AA08	12	0.62	AA08
100	2gcv_B_A107_C108	NAN	NANT	0	0.79	AA00
101	2gcv_B_C108_C109	AAA	AA00	96	0.09	AA00
102	2gcv_B_C109_A110	AAA	AA00	96	0.13	AA00
103	2gcv_B_A110_C111	AAA	AA00	88	0.13	AA00
104	2gcv_B_C111_A112	AAA	AA00	91	0.15	AA00
105	2gcv_B_A112_G113	AAA	AA00	80	0.18	AA00
106	2gcv_B_G113_G114	AAA	AA00	91	0.17	AA00
107	2gcv_B_G114_C115	OPN	OP03	84	0.32	OP03
108	2gcv_B_C115_G116	AAA	AA08	40	0.43	AA08
109	2gcv_B_G116_A117	AAA	AA02	62	0.21	AA02
110	2gcv_B_A117_C118	NAN	NANT	0	1.03	AA08
111	2gcv_B_C118_U119	AAA	AA00	89	0.19	AA00
112	2gcv_B_U119_G120	AAA	AA00	85	0.15	AA00
113	2gcv_B_G120_U121	AAA	AA00	92	0.12	AA00
114	2gcv_B_U121_G122	AAA	AA00	96	0.09	AA00
115	2gcv_B_G122_G123	AAA	AA00	96	0.12	AA00
116	2gcv_B_G123_C124	AAA	AA00	89	0.18	AA00
117	2gcv_B_C124_A125	AAu	AA12	89	0.20	AA12
118	2gcv_B_A125_U126	AAA	AA00	69	0.29	AA00
119	2gcv_B_U126_A127	NAN	NANT	0	0.60	IC04
120	2gcv_B_A127_G128	AAA	AA08	82	0.30	AA08
121	2gcv_B_G128_A129	AAA	AA00	77	0.18	AA00
122	2gcv_B_A129_G130	NAN	NANT	0	0.67	OP04
123	2gcv_B_G130_C131	OPN	OPS1	48	0.65	OPS1
124	2gcv_B_C131_A132	AAA	AA00	83	0.20	AA00
125	2gcv_B_A132_G133	AAA	AA00	95	0.08	AA00
126	2gcv_B_G133_U134	AAA	AA00	95	0.09	AA00
127	2gcv_B_U134_C135	AAA	AA00	92	0.15	AA00
128	2gcv_B_C135_C136	AAA	AA00	96	0.15	AA00
129	2gcv_B_C136_G137	AAA	AA00	27	0.44	AA00
130	2gcv_B_G137_G138	ICL	IC03	60	0.48	IC03
131	2gcv_B_G138_G139	NAN	NANT	0	1.79	OP12
132	2gcv_B_G139_C140	AAA	AA04	75	0.24	AA04
133	2gcv_B_C140_A141	AAA	AA00	94	0.15	AA00
134	2gcv_B_A141_G142	AAA	AA00	92	0.15	AA00
135	2gcv_B_G142_G143	AAA	AA00	83	0.26	AA00
136	2gcv_B_G143_A144	AAA	AA00	83	0.25	AA00
137	2gcv_B_A144_A23145	NAN	NANT	0	0.52	IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 137 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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