DNATCO v4.1: results

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Results of the assignment of 137 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2gcs_A_G1_C2	NAN	NANT	0	0.77	OP27
002	2gcs_A_C2_G3	AAA	AA00	57	0.23	AA00
003	2gcs_A_G3_C4	AAA	AA00	55	0.18	AA00
004	2gcs_A_C4_C5	NAN	NANT	0	0.36	AA01
005	2gcs_A_G7_G8	AAA	AA00	51	0.39	AA00
006	2gcs_A_G8_A9	AAA	AA00	72	0.30	AA00
007	2gcs_A_A9_C10	AAA	AA00	82	0.13	AA00
008	2gcs_A_C10_U11	AAA	AA00	66	0.29	AA00
009	2gcs_A_U11_U12	AAA	AA00	96	0.14	AA00
010	2gcs_A_U12_A13	AAA	AA00	96	0.11	AA00
011	2gcs_A_A13_A14	AAA	AA00	87	0.11	AA00
012	2gcs_A_A14_A15	AAA	AA00	84	0.12	AA00
013	2gcs_A_A15_G16	AAA	AA00	86	0.15	AA00
014	2gcs_A_G16_C17	AAA	AA00	88	0.16	AA00
015	2gcs_A_C17_C18	AAA	AA00	93	0.12	AA00
016	2gcs_A_C18_A19	AAA	AA00	85	0.17	AA00
017	2gcs_A_A19_U20	AAA	AA00	38	0.24	AA00
018	2gcs_B_G23_G24	AAA	AA00	65	0.19	AA00
019	2gcs_B_G24_C25	AAA	AA00	96	0.11	AA00
020	2gcs_B_C25_U26	AAA	AA00	91	0.15	AA00
021	2gcs_B_U26_U27	AAA	AA00	96	0.11	AA00
022	2gcs_B_U27_U28	AAA	AA00	90	0.14	AA00
023	2gcs_B_U28_A29	AAA	AA00	94	0.11	AA00
024	2gcs_B_A29_A30	AAA	AA00	86	0.15	AA00
025	2gcs_B_A30_G31	AAw	AA01	95	0.10	AA01
026	2gcs_B_G31_U32	AAA	AA00	69	0.22	AA00
027	2gcs_B_U32_U33	AAA	AA00	86	0.25	AA00
028	2gcs_B_U33_G34	AAA	AA08	64	0.34	AA08
029	2gcs_B_G34_A35	NAN	NANT	0	1.06	OP28
030	2gcs_B_A35_C36	NAN	NANT	0	0.46	OP26
031	2gcs_B_C36_G37	AAw	AA11	57	0.21	AA11
032	2gcs_B_G37_A38	AAA	AA00	57	0.21	AA00
033	2gcs_B_A38_G39	AAA	AA00	52	0.37	AA00
034	2gcs_B_G39_G40	AAA	AA00	84	0.15	AA00
035	2gcs_B_G40_G41	ICL	IC01	86	0.28	IC01
036	2gcs_B_G41_C42	NAN	NANT	0	0.52	OP13
037	2gcs_B_C42_A43	AAA	AA00	73	0.22	AA00
038	2gcs_B_A43_G44	AAA	AA00	94	0.13	AA00
039	2gcs_B_G44_G45	AAA	AA00	91	0.14	AA00
040	2gcs_B_G45_G46	AAA	AA00	88	0.16	AA00
041	2gcs_B_G46_U47	AAA	AA00	87	0.21	AA00
042	2gcs_B_U47_U48	A-B	AB01	19	0.32	AB01
043	2gcs_B_U48_U49	NAN	NANT	0	0.68	OP29
044	2gcs_B_U49_A50	NAN	NANT	0	0.76	OP30
045	2gcs_B_A50_U51	NAN	NANT	0	0.68	OP16
046	2gcs_B_U51_C52	AAA	AA00	94	0.15	AA00
047	2gcs_B_C52_G53	NAN	NANT	0	0.44	AA08
048	2gcs_B_G53_A54	AAA	AA00	36	0.31	AA00
049	2gcs_B_A54_G55	NAN	NANT	0	1.37	OP29
050	2gcs_B_G55_A56	NAN	NANT	0	0.90	OPS1
051	2gcs_B_A56_C57	NAN	NANT	0	0.38	AB04
052	2gcs_B_C57_A58	NAN	NANT	0	2.06	OP09
053	2gcs_B_A58_U59	NAN	NANT	0	0.74	OP21
054	2gcs_B_U59_C60	NAN	NANT	0	0.71	OP11
055	2gcs_B_C60_G61	AAA	AA00	73	0.36	AA00
056	2gcs_B_G61_G62	AAA	AA00	90	0.14	AA00
057	2gcs_B_G62_C63	AAA	AA00	95	0.10	AA00
058	2gcs_B_C63_G64	AAA	AA00	86	0.16	AA00
059	2gcs_B_G64_G65	AAA	AA00	83	0.20	AA00
060	2gcs_B_G65_G66	AAA	AA00	57	0.34	AA00
061	2gcs_B_G66_U67	OPN	OP09	10	0.45	OP09
062	2gcs_B_U67_G68	OPN	OP11	25	0.50	OP11
063	2gcs_B_G68_C69	AAA	AA00	83	0.22	AA00
064	2gcs_B_C69_C70	AAA	AA00	84	0.19	AA00
065	2gcs_B_C70_C71	AAA	AA00	98	0.11	AA00
066	2gcs_B_C71_U72	AAA	AA00	94	0.13	AA00
067	2gcs_B_U72_G73	AAA	AA00	98	0.10	AA00
068	2gcs_B_G73_C74	AAA	AA00	86	0.16	AA00
069	2gcs_B_C74_G75	AAA	AA00	93	0.15	AA00
070	2gcs_B_G75_G76	AAA	AA00	88	0.14	AA00
071	2gcs_B_G76_U77	AAA	AA00	92	0.08	AA00
072	2gcs_B_U77_C78	AAA	AA00	96	0.15	AA00
073	2gcs_B_C78_U79	NAN	NANT	0	1.13	OP05
074	2gcs_B_U79_U80	NAN	NANT	0	0.72	OP26
075	2gcs_B_U80_C81	AAA	AA00	93	0.17	AA00
076	2gcs_B_C81_C82	AAA	AA00	98	0.12	AA00
077	2gcs_B_C82_U83	AAA	AA00	93	0.15	AA00
078	2gcs_B_U83_G84	AAA	AA00	92	0.12	AA00
079	2gcs_B_G84_C85	AAA	AA00	94	0.11	AA00
080	2gcs_B_C85_G86	AAA	AA00	91	0.15	AA00
081	2gcs_B_G86_A87	AAA	AA00	86	0.15	AA00
082	2gcs_B_A87_C88	AAA	AA00	93	0.10	AA00
083	2gcs_B_C88_C89	AAw	AA01	82	0.19	AA01
084	2gcs_B_C89_G90	A-B	AB05	82	0.28	AB05
085	2gcs_B_G90_U91	OPN	OP22	67	0.61	OP22
086	2gcs_B_U91_U92	OPN	OP21	44	0.44	OP21
087	2gcs_B_U92_A93	OPN	OP11	45	0.37	OP11
088	2gcs_B_A93_G94	NAN	NANT	0	0.82	OP30
089	2gcs_B_G94_A95	B-A	BA08	36	0.59	BA08
090	2gcs_B_A95_G96	AAA	AA08	32	0.43	AA08
091	2gcs_B_G96_G97	AAA	AA00	78	0.20	AA00
092	2gcs_B_G97_A98	AAA	AA00	92	0.18	AA00
093	2gcs_B_A98_C99	AAA	AA00	93	0.07	AA00
094	2gcs_B_C99_U100	AAA	AA00	91	0.15	AA00
095	2gcs_B_U100_G101	AAA	AA00	72	0.36	AA00
096	2gcs_B_G101_G102	A-B	AB05	24	0.42	AB05
097	2gcs_B_A104_A105	AAw	AA06	32	0.30	AA06
098	2gcs_B_A105_A106	AAA	AA08	82	0.23	AA08
099	2gcs_B_A106_A107	AAA	AA08	16	0.60	AA08
100	2gcs_B_A107_C108	NAN	NANT	0	0.80	AA00
101	2gcs_B_C108_C109	AAA	AA00	91	0.11	AA00
102	2gcs_B_C109_A110	AAA	AA00	90	0.14	AA00
103	2gcs_B_A110_C111	AAA	AA00	85	0.14	AA00
104	2gcs_B_C111_A112	AAA	AA00	86	0.16	AA00
105	2gcs_B_A112_G113	AAA	AA00	84	0.17	AA00
106	2gcs_B_G113_G114	AAA	AA00	92	0.17	AA00
107	2gcs_B_G114_C115	OPN	OP03	89	0.30	OP03
108	2gcs_B_C115_G116	AAA	AA08	44	0.43	AA08
109	2gcs_B_G116_A117	AAA	AA02	62	0.22	AA02
110	2gcs_B_A117_C118	NAN	NANT	0	1.02	AA08
111	2gcs_B_C118_U119	AAA	AA00	91	0.19	AA00
112	2gcs_B_U119_G120	AAA	AA00	79	0.18	AA00
113	2gcs_B_G120_U121	AAA	AA00	89	0.14	AA00
114	2gcs_B_U121_G122	AAA	AA00	94	0.12	AA00
115	2gcs_B_G122_G123	AAA	AA00	96	0.13	AA00
116	2gcs_B_G123_C124	AAA	AA00	41	0.39	AA00
117	2gcs_B_C124_A125	AAA	AA00	53	0.33	AA00
118	2gcs_B_A125_U126	AAA	AA00	64	0.30	AA00
119	2gcs_B_U126_A127	NAN	NANT	0	0.57	IC04
120	2gcs_B_A127_G128	AAA	AA08	82	0.32	AA08
121	2gcs_B_G128_A129	AAA	AA00	72	0.22	AA00
122	2gcs_B_A129_G130	NAN	NANT	0	0.62	OP04
123	2gcs_B_G130_C131	OPN	OPS1	32	0.72	OPS1
124	2gcs_B_C131_A132	AAA	AA00	78	0.21	AA00
125	2gcs_B_A132_G133	AAA	AA00	96	0.09	AA00
126	2gcs_B_G133_U134	AAA	AA00	96	0.10	AA00
127	2gcs_B_U134_C135	AAA	AA00	93	0.15	AA00
128	2gcs_B_C135_C136	AAA	AA00	97	0.13	AA00
129	2gcs_B_C136_G137	AAA	AA00	15	0.46	AA00
130	2gcs_B_G137_G138	ICL	IC03	75	0.46	IC03
131	2gcs_B_G138_G139	NAN	NANT	0	1.79	OP12
132	2gcs_B_G139_C140	AAA	AA04	67	0.25	AA04
133	2gcs_B_C140_A141	AAA	AA00	86	0.17	AA00
134	2gcs_B_A141_G142	AAA	AA00	96	0.10	AA00
135	2gcs_B_G142_G143	AAA	AA00	88	0.20	AA00
136	2gcs_B_G143_A144	AAA	AA00	89	0.17	AA00
137	2gcs_B_A144_A23145	NAN	NANT	0	0.42	AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 137 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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