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Conformers: ABBIImiBZICOPNSYNN
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Structure of E. coli DNA adenine methyltransferase (DAM)

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012g1p_F_DT1_DC2BBBBB00850.16 BB00
022g1p_F_DC2_DT3BBBBB01870.14 BB01
032g1p_F_DT3_DA4BBBBB00470.52 BB00
042g1p_F_DA4_DG5BBBBB00830.25 BB00
052g1p_F_DG5_DA6NANNANT01.03 OP14
062g1p_F_DA6_DT7NANNANT00.80 OP13
072g1p_F_DT7_DC8BBBBB00770.20 BB00
082g1p_F_DC8_DT9BBBBB01820.14 BB01
092g1p_F_DT9_DA10BBBBB00490.50 BB00
102g1p_F_DA10_DG11BBBBB00820.26 BB00
112g1p_F_DG11_DA12NANNANT01.07 OP14
122g1p_G_DT1_DC2BBwBB02420.27 BB02
132g1p_G_DC2_DT3BBBBB00740.22 BB00
142g1p_G_DT3_DA4BBBBB00840.28 BB00
152g1p_G_DA4_DG5B12BB04660.30 BB04
162g1p_G_DG5_DA6BBBBB00850.16 BB00
172g1p_G_DA6_DT7OPNOP20320.48 OP20
182g1p_G_DT7_DC8NANNANT01.24 OP19
192g1p_G_DC8_DT9BBBBB00620.24 BB00
202g1p_G_DT9_DA10BBBBB00850.28 BB00
212g1p_G_DA10_DG11B12BB04790.28 BB04
222g1p_G_DG11_DA12BBBBB00870.15 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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