Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2fvq_B_DC.A1_DT.A2 | BBB | BB00 | 86 | 0.21 |
| 02 | 2fvq_B_DC.B1_DT.B2 | BBB | BB00 | 86 | 0.21 |
| 03 | 2fvq_B_DT.A2_DT.A3 | BBB | BB00 | 89 | 0.22 |
| 04 | 2fvq_B_DT.B2_DT.B3 | BBB | BB00 | 90 | 0.22 |
| 05 | 2fvq_B_DT.A3_DT.A4 | BBB | BB00 | 91 | 0.15 |
| 06 | 2fvq_B_DT.B3_DT.B4 | BBB | BB00 | 92 | 0.14 |
| 07 | 2fvq_B_DT.A4_DC.A5 | B12 | BB04 | 82 | 0.17 |
| 08 | 2fvq_B_DT.B4_DC.B5 | B12 | BB04 | 83 | 0.16 |
| 09 | 2fvq_B_DC.A5_DA.A6 | BBw | BB02 | 72 | 0.23 |
| 10 | 2fvq_B_DC.B5_DA.B6 | BBw | BB02 | 75 | 0.23 |
| 11 | 2fvq_B_DA.A6_DT.A7 | BBB | BB00 | 78 | 0.21 |
| 12 | 2fvq_B_DA.B6_DT.B7 | BBB | BB00 | 78 | 0.21 |
| 13 | 2fvq_B_DT.A7_DT.A8 | BBB | BB00 | 88 | 0.24 |
| 14 | 2fvq_B_DT.B7_DT.B8 | BBB | BB00 | 85 | 0.28 |
| 15 | 2fvq_B_DT.A8_DA.A9 | BBB | BB00 | 70 | 0.29 |
| 16 | 2fvq_B_DT.B8_DA.B9 | BBB | BB00 | 89 | 0.22 |
| 17 | 2fvq_B_DA.A9_DA.A10 | BBw | BB02 | 73 | 0.38 |
| 18 | 2fvq_B_DA.B9_DA.B10 | BBw | BB02 | 76 | 0.36 |
| 19 | 2fvq_B_DA.A10_DT.A11 | BBw | BB03 | 85 | 0.20 |
| 20 | 2fvq_B_DA.B10_DT.B11 | BBw | BB03 | 84 | 0.20 |
| 21 | 2fvq_B_DT.A11_DG.A12 | BBB | BB00 | 67 | 0.22 |
| 22 | 2fvq_B_DT.B11_DG.B12 | BBB | BB00 | 66 | 0.19 |
| 23 | 2fvq_B_DG.A12_DA.A13 | BBB | BB00 | 90 | 0.20 |
| 24 | 2fvq_B_DG.B12_DA.B13 | NAN | NANT | 0 | 0.35 |
| 25 | 2fvq_B_DA.A13_DA.A14 | BBw | BB02 | 45 | 0.26 |
| 26 | 2fvq_B_DA.B13_DA.B14 | BBB | BB00 | 29 | 0.52 |
| 27 | 2fvq_B_DA.A14_DA.A15 | BBw | BB02 | 60 | 0.19 |
| 28 | 2fvq_B_DA.B14_DA.B15 | BBw | BB02 | 61 | 0.35 |
| 29 | 2fvq_B_DA.A15_DG.A16 | BBB | BB00 | 73 | 0.32 |
| 30 | 2fvq_B_DA.B15_DG.B16 | BBB | BB00 | 65 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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