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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of RNAse Z/tRNA(Thr) complex

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012fk6_R_G1_C2AAAAA00180.30 AA00
022fk6_R_C2_U3AAAAA00710.20 AA00
032fk6_R_U3_U4AAAAA00660.24 AA00
042fk6_R_U4_C5AAAAA00940.19 AA00
052fk6_R_C5_C6AAwAA01530.23 AA01
062fk6_R_C6_A7NANNANT00.55 AA06
072fk6_R_A7_U8NANNANT01.75 IC03
082fk6_R_U8_A9NANNANT01.30 IC04
092fk6_R_A9_G10NANNANT01.29 AA12
102fk6_R_G10_C11AAwAA01380.52 AA01
112fk6_R_C11_U12AAwAA01330.38 AA01
122fk6_R_U12_C13AAAAA08610.28 AA08
132fk6_R_C13_A14NANNANT00.78 AA06
142fk6_R_A14_G15AAAAA04190.74 AA04
152fk6_R_G15_C16NANNANT01.25 OP31
162fk6_R_C16_A17NANNANT00.55 OP31
172fk6_R_A17_G18NANNANT00.92 OP13
182fk6_R_G18_G19NANNANT01.40 AB02
192fk6_R_G19_U20NANNANT01.79 OP31
202fk6_R_U20_A21NANNANT00.76 OP05
212fk6_R_A21_G22NANNANT00.52 IC07
222fk6_R_G22_A23NANNANT00.59 AA01
232fk6_R_A23_G24AAwAA06450.36 AA06
242fk6_R_G24_C25NANNANT00.60 AB04
252fk6_R_G46_U47NANNANT01.15 OP04
262fk6_R_U47_C48NANNANT01.19 OP11
272fk6_R_C48_A49NANNANT01.74 OP06
282fk6_R_A49_G50AAAAA00810.14 AA00
292fk6_R_G50_C51AAAAA04630.37 AA04
302fk6_R_C51_G52AAAAA00890.19 AA00
312fk6_R_G52_G53AAAAA00770.27 AA00
322fk6_R_G53_U54AAAAA00770.18 AA00
332fk6_R_U54_U55AAAAA00460.43 AA00
342fk6_R_U55_C56OPNOP04650.15 OP04
352fk6_R_C56_G57AAAAA00730.28 AA00
362fk6_R_G57_A58NANNANT00.68 AB04
372fk6_R_A58_G59NANNANT01.33 OP18
382fk6_R_G59_C60AAwAA05280.40 AA05
392fk6_R_C60_C61NANNANT00.46 OP12
402fk6_R_C61_C62NANNANT00.51 AA12
412fk6_R_C62_G63AAwAA01670.30 AA01
422fk6_R_G63_C64AAAAA08140.32 AA08
432fk6_R_C64_U65AAAAA00270.24 AA00
442fk6_R_U65_U66NANNANT00.65 BA10
452fk6_R_U66_G67NANNANT00.68 AA11
462fk6_R_G67_G68NANNANT00.36 AA01
472fk6_R_G68_A69NANNANT00.32 AB04
482fk6_R_A69_A70NANNANT00.43 AA01
492fk6_R_A70_G71BBwBB16300.55 BB16
502fk6_R_G71_C72BBBBB01110.32 BB01
512fk6_R_C72_U73NANNANT01.61 OP31

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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