Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2fil_A_DG101_DC102 | AAA | AA00 | 48 | 0.28 |
| 02 | 2fil_A_DC102_DG103 | AAA | AA04 | 89 | 0.27 |
| 03 | 2fil_A_DG103_DT104 | AAA | AA00 | 83 | 0.12 |
| 04 | 2fil_A_DT104_A2M105 | NAN | NANT | 0 | 0.26 |
| 05 | 2fil_A_A2M105_TAF106 | NAN | NANT | 0 | 0.44 |
| 06 | 2fil_A_TAF106_DA107 | NAN | NANT | 0 | 0.61 |
| 07 | 2fil_A_DA107_DC108 | B-A | BA13 | 62 | 0.33 |
| 08 | 2fil_A_DC108_DG109 | NAN | NANT | 0 | 0.35 |
| 09 | 2fil_A_DG109_DC110 | AAA | AA00 | 16 | 0.27 |
| 10 | 2fil_B_DG201_DC202 | AAA | AA00 | 27 | 0.30 |
| 11 | 2fil_B_DC202_DG203 | AAA | AA00 | 81 | 0.29 |
| 12 | 2fil_B_DG203_DT204 | AAA | AA04 | 69 | 0.27 |
| 13 | 2fil_B_DT204_A2M205 | AAA | AA04 | 89 | 0.17 |
| 14 | 2fil_B_A2M205_TAF206 | AAA | AA00 | 61 | 0.29 |
| 15 | 2fil_B_TAF206_DA207 | A-B | AB05 | 17 | 0.43 |
| 16 | 2fil_B_DA207_DC208 | B-A | BA13 | 21 | 0.33 |
| 17 | 2fil_B_DC208_DG209 | A-B | AB04 | 31 | 0.44 |
| 18 | 2fil_B_DG209_DC210 | B-A | BA08 | 36 | 0.51 |
| 19 | 2fil_C_DG301_DC302 | AAA | AA03 | 58 | 0.36 |
| 20 | 2fil_C_DC302_DG303 | AAA | AA00 | 88 | 0.22 |
| 21 | 2fil_C_DG303_DT304 | AAA | AA04 | 87 | 0.19 |
| 22 | 2fil_C_DT304_A2M305 | AAA | AA00 | 78 | 0.28 |
| 23 | 2fil_C_A2M305_TAF306 | NAN | NANT | 0 | 0.36 |
| 24 | 2fil_C_TAF306_DA307 | NAN | NANT | 0 | 0.44 |
| 25 | 2fil_C_DA307_DC308 | NAN | NANT | 0 | 0.44 |
| 26 | 2fil_C_DC308_DG309 | NAN | NANT | 0 | 0.33 |
| 27 | 2fil_C_DG309_DC310 | AAA | AA02 | 9 | 0.53 |
| 28 | 2fil_D_DG401_DC402 | NAN | NANT | 0 | 0.38 |
| 29 | 2fil_D_DC402_DG403 | AAA | AA04 | 68 | 0.34 |
| 30 | 2fil_D_DG403_DT404 | AAA | AA04 | 79 | 0.21 |
| 31 | 2fil_D_DT404_A2M405 | AAA | AA08 | 17 | 0.29 |
| 32 | 2fil_D_A2M405_TAF406 | AAA | AA08 | 81 | 0.19 |
| 33 | 2fil_D_TAF406_DA407 | A-B | AB04 | 67 | 0.27 |
| 34 | 2fil_D_DA407_DC408 | B-A | BA05 | 23 | 0.30 |
| 35 | 2fil_D_DC408_DG409 | NAN | NANT | 0 | 0.33 |
| 36 | 2fil_D_DG409_DC410 | NAN | NANT | 0 | 0.63 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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