Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of activated Notch, CSL and MAML on HES-1 promoter DNA sequence
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2f8x_X_DG0_DT1 | BBB | BB00 | 15 | 0.32 |
| 02 | 2f8x_X_DT1_DT2 | BBw | BB02 | 79 | 0.19 |
| 03 | 2f8x_X_DT2_DA3 | BBB | BB00 | 68 | 0.20 |
| 04 | 2f8x_X_DA3_DC4 | BBw | BB02 | 81 | 0.16 |
| 05 | 2f8x_X_DC4_DT5 | BBB | BB00 | 43 | 0.21 |
| 06 | 2f8x_X_DT5_DG6 | BBw | BB11 | 66 | 0.30 |
| 07 | 2f8x_X_DG6_DT7 | BBw | BB02 | 64 | 0.33 |
| 08 | 2f8x_X_DT7_DG8 | BBB | BB00 | 57 | 0.33 |
| 09 | 2f8x_X_DG8_DG9 | B12 | BB04 | 42 | 0.15 |
| 10 | 2f8x_X_DG9_DG10 | B12 | BB04 | 55 | 0.22 |
| 11 | 2f8x_X_DG10_DA11 | B12 | BB04 | 53 | 0.26 |
| 12 | 2f8x_X_DA11_DA12 | BBB | BB00 | 62 | 0.23 |
| 13 | 2f8x_X_DA12_DA13 | BBB | BB00 | 65 | 0.23 |
| 14 | 2f8x_X_DA13_DG14 | NAN | NANT | 0 | 0.42 |
| 15 | 2f8x_X_DG14_DA15 | BBB | BB00 | 56 | 0.24 |
| 16 | 2f8x_X_DA15_DA16 | BBB | BB00 | 71 | 0.26 |
| 17 | 2f8x_X_DA16_DA17 | miB | BB13 | 67 | 0.28 |
| 18 | 2f8x_Y_DT101_DT102 | NAN | NANT | 0 | 0.57 |
| 19 | 2f8x_Y_DT102_DT103 | miB | BB15 | 36 | 0.40 |
| 20 | 2f8x_Y_DT103_DC104 | NAN | NANT | 0 | 0.45 |
| 21 | 2f8x_Y_DC104_DT105 | BBB | BB00 | 50 | 0.29 |
| 22 | 2f8x_Y_DT105_DT106 | BBB | BB00 | 65 | 0.24 |
| 23 | 2f8x_Y_DT106_DT107 | BBw | BB02 | 77 | 0.16 |
| 24 | 2f8x_Y_DT107_DC108 | BBw | BB02 | 62 | 0.25 |
| 25 | 2f8x_Y_DC108_DC109 | BBw | BB02 | 68 | 0.27 |
| 26 | 2f8x_Y_DC109_DC110 | BBB | BB00 | 48 | 0.19 |
| 27 | 2f8x_Y_DC110_DA111 | B12 | BB04 | 33 | 0.32 |
| 28 | 2f8x_Y_DA111_DC112 | BBw | BB11 | 73 | 0.27 |
| 29 | 2f8x_Y_DC112_DA113 | BBw | BB02 | 22 | 0.76 |
| 30 | 2f8x_Y_DA113_DG114 | NAN | NANT | 0 | 0.45 |
| 31 | 2f8x_Y_DG114_DT115 | miB | BB15 | 34 | 0.35 |
| 32 | 2f8x_Y_DT115_DA116 | BBB | BB00 | 29 | 0.29 |
| 33 | 2f8x_Y_DA116_DA117 | BBB | BB00 | 40 | 0.20 |
| 34 | 2f8x_Y_DA117_DC118 | NAN | NANT | 0 | 0.68 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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