DNATCO v4.1: results

Crystal structure of Aa-Ago with externally-bound siRNA

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2f8t_C_A1_G2	AAA	AA00	27	0.29	AA00
02	2f8t_C_G2_A3	NAN	NANT	0	0.48	AA04
03	2f8t_C_A3_C4	AAA	AA00	76	0.25	AA00
04	2f8t_C_C4_A5	AAA	AA04	80	0.22	AA04
05	2f8t_C_A5_G6	NAN	NANT	0	0.40	AA04
06	2f8t_C_G6_C7	AAA	AA00	87	0.13	AA00
07	2f8t_C_C7_A8	NAN	NANT	0	0.43	AA04
08	2f8t_C_A8_U9	NAN	NANT	0	0.30	AA04
09	2f8t_C_U9_G10	AAA	AA04	35	0.36	AA04
10	2f8t_C_G10_C11	NAN	NANT	0	0.38	AA10
11	2f8t_C_C11_A12	AAA	AA00	13	0.28	AA00
12	2f8t_C_A12_U13	AAA	AA08	58	0.36	AA08
13	2f8t_C_U13_G14	AAA	AA08	89	0.20	AA08
14	2f8t_C_G14_C15	AAA	AA08	93	0.20	AA08
15	2f8t_C_C15_A16	AAA	AA08	85	0.23	AA08
16	2f8t_C_A16_U17	AAA	AA00	58	0.32	AA00
17	2f8t_C_U17_G18	AAA	AA04	87	0.20	AA04
18	2f8t_C_G18_C19	AAA	AA08	74	0.18	AA08
19	2f8t_C_C19_U20	AAA	AA00	59	0.24	AA00
20	2f8t_C_U20_G21	AAA	AA00	67	0.21	AA00
21	2f8t_C_G21_U22	AAA	AA00	66	0.18	AA00
22	2f8t_C_U22_C23	AAA	AA08	76	0.25	AA08
23	2f8t_C_C23_U24	AAA	AA00	73	0.30	AA00
24	2f8t_C_U24_U25	ZZZ	ZZ01	40	0.18	ZZ01
25	2f8t_C_U25_U26	NAN	NANT	0	0.70	OP13
26	2f8t_D_A1_G2	NAN	NANT	0	0.42	AA04
27	2f8t_D_G2_A3	AAA	AA00	79	0.15	AA00
28	2f8t_D_A3_C4	AAA	AA08	77	0.26	AA08
29	2f8t_D_C4_A5	AAA	AA08	37	0.28	AA08
30	2f8t_D_A5_G6	AAA	AA00	53	0.26	AA00
31	2f8t_D_G6_C7	AAA	AA00	67	0.21	AA00
32	2f8t_D_C7_A8	AAA	AA00	87	0.15	AA00
33	2f8t_D_A8_U9	AAw	AA10	65	0.15	AA10
34	2f8t_D_U9_G10	AAA	AA00	67	0.20	AA00
35	2f8t_D_G10_C11	AAA	AA00	94	0.12	AA00
36	2f8t_D_C11_A12	AAA	AA00	93	0.16	AA00
37	2f8t_D_A12_U13	AAA	AA03	65	0.16	AA03
38	2f8t_D_U13_G14	AAA	AA04	74	0.21	AA04
39	2f8t_D_G14_C15	AAA	AA00	32	0.24	AA00
40	2f8t_D_C15_A16	AAA	AA04	38	0.33	AA04
41	2f8t_D_A16_U17	AAA	AA03	17	0.31	AA03
42	2f8t_D_U17_G18	AAA	AA00	70	0.20	AA00
43	2f8t_D_G18_C19	AAA	AA08	8	0.52	AA08
44	2f8t_D_C19_U20	AAA	AA04	63	0.44	AA04
45	2f8t_D_U20_G21	AAA	AA08	47	0.32	AA08
46	2f8t_D_G21_U22	AAA	AA00	52	0.28	AA00
47	2f8t_D_U22_C23	AAA	AA00	26	0.44	AA00
48	2f8t_D_C23_U24	NAN	NANT	0	0.53	AA11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible