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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Aa-Ago with externally-bound siRNA

Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012f8s_C_A1_G2NANNANT00.80 AA01
022f8s_C_G2_A3NANNANT00.71 AA04
032f8s_C_A3_C4AAAAA00610.22 AA00
042f8s_C_C4_A5AAAAA08500.26 AA08
052f8s_C_A5_G6AAAAA08650.29 AA08
062f8s_C_G6_C7AAAAA04840.22 AA04
072f8s_C_C7_A8AAAAA00180.34 AA00
082f8s_C_A8_U9AAAAA08560.25 AA08
092f8s_C_U9_A10AAAAA00580.17 AA00
102f8s_C_A10_U11AAAAA03240.23 AA03
112f8s_C_U11_A12AAAAA08650.28 AA08
122f8s_C_A12_U13AAAAA03500.39 AA03
132f8s_C_U13_G14AAAAA04590.39 AA04
142f8s_C_G14_C15AAAAA00830.21 AA00
152f8s_C_C15_U16AAAAA04940.17 AA04
162f8s_C_U16_G17AAAAA00720.20 AA00
172f8s_C_G17_U18AAAAA00830.15 AA00
182f8s_C_U18_C19AAAAA08600.22 AA08
192f8s_C_C19_U20AAAAA00530.34 AA00
202f8s_C_U20_U21ZZZZZ01160.29 ZZ01
212f8s_C_U21_U22NANNANT01.11 OP14
222f8s_D_A1_G2AAAAA00540.17 AA00
232f8s_D_G2_A3AAAAA00510.17 AA00
242f8s_D_A3_C4AAAAA04780.20 AA04
252f8s_D_C4_A5AAAAA00500.19 AA00
262f8s_D_A5_G6AAAAA03330.21 AA03
272f8s_D_G6_C7AAwAA10360.28 AA10
282f8s_D_C7_A8AAAAA08590.24 AA08
292f8s_D_A8_U9AAAAA08710.26 AA08
302f8s_D_U9_A10AAAAA00640.27 AA00
312f8s_D_A10_U11AAAAA00500.21 AA00
322f8s_D_U11_A12AAAAA00480.23 AA00
332f8s_D_A12_U13AAAAA03570.21 AA03
342f8s_D_U13_G14AAAAA04350.39 AA04
352f8s_D_G14_C15AAAAA00560.28 AA00
362f8s_D_C15_U16AAAAA08500.43 AA08
372f8s_D_U16_G17AAAAA08400.45 AA08
382f8s_D_G17_U18AAAAA08510.26 AA08
392f8s_D_U18_C19NANNANT00.55 AA10
402f8s_D_C19_U20NANNANT00.85 AA10
412f8s_D_U20_U21AAAAA08110.76 AA08
422f8s_D_U21_U22NANNANT01.30 OP04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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