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Conformers: ABBIImiBZICOPNSYNN
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2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012f8n_I_DA1_DT2BBBBB00350.32 BB00
0022f8n_I_DT2_DC3BBBBB00830.16 BB00
0032f8n_I_DC3_DA4B12BB04840.27 BB04
0042f8n_I_DA4_DA5BBBBB00980.10 BB00
0052f8n_I_DA5_DT6BBwBB02900.14 BB02
0062f8n_I_DT6_DA7B12BB04470.27 BB04
0072f8n_I_DA7_DT8BBBBB00940.17 BB00
0082f8n_I_DT8_DC9BBBBB00810.22 BB00
0092f8n_I_DC9_DC10BBBBB00660.32 BB00
0102f8n_I_DC10_DA11BB2BB07560.47 BB07
0112f8n_I_DA11_DC12BBBBB00950.15 BB00
0122f8n_I_DC12_DC13BBBBB00490.39 BB00
0132f8n_I_DC13_DT14BBBBB00930.16 BB00
0142f8n_I_DT14_DG15BB2BB07520.49 BB07
0152f8n_I_DG15_DC16BBBBB00450.43 BB00
0162f8n_I_DC16_DA17BB2BB07750.36 BB07
0172f8n_I_DA17_DG18BBBBB00640.27 BB00
0182f8n_I_DG18_DA19BBBBB00610.40 BB00
0192f8n_I_DA19_DT20BBBBB00940.14 BB00
0202f8n_I_DT20_DT21miBBB13830.26 BB13
0212f8n_I_DT21_DC22BBwBB02330.60 BB02
0222f8n_I_DC22_DT23BBwBB03950.12 BB03
0232f8n_I_DT23_DA24BBwBB11560.48 BB11
0242f8n_I_DA24_DC25NANNANT00.52 BB08
0252f8n_I_DC25_DC26NANNANT00.54 BB00
0262f8n_I_DC26_DA27NANNANT00.61 BB08
0272f8n_I_DA27_DA28BBBBB00790.35 BB00
0282f8n_I_DA28_DA29BB2BB08460.32 BB08
0292f8n_I_DA29_DA30BBBBB00530.26 BB00
0302f8n_I_DA30_DG31BBwBB11870.20 BB11
0312f8n_I_DG31_DT32NANNANT00.51 BB15
0322f8n_I_DT32_DG33BBBBB00760.23 BB00
0332f8n_I_DG33_DT34miBBB13860.21 BB13
0342f8n_I_DT34_DA35BBBBB00130.48 BB00
0352f8n_I_DA35_DT36BBBBB00620.39 BB00
0362f8n_I_DT36_DT37BBBBB00710.28 BB00
0372f8n_I_DT37_DT38NANNANT00.59 BB08
0382f8n_I_DT38_DG39BBBBB00260.68 BB00
0392f8n_I_DG39_DG40BB2BB07550.38 BB07
0402f8n_I_DG40_DA41BBBBB00800.24 BB00
0412f8n_I_DA41_DA42BBBBB00840.20 BB00
0422f8n_I_DA42_DA43BBBBB00790.32 BB00
0432f8n_I_DA43_DC44BBBBB00330.42 BB00
0442f8n_I_DC44_DT45B12BB04850.19 BB04
0452f8n_I_DT45_DG46BBBBB00710.27 BB00
0462f8n_I_DG46_DC47BB2BB07680.34 BB07
0472f8n_I_DC47_DT48BBwBB03830.33 BB03
0482f8n_I_DT48_DC49BBBBB00170.40 BB00
0492f8n_I_DC49_DC50BBBBB00600.28 BB00
0502f8n_I_DC50_DA51BBwBB02620.18 BB02
0512f8n_I_DA51_DT52B12BB04430.39 BB04
0522f8n_I_DT52_DC53BBBBB00460.33 BB00
0532f8n_I_DC53_DA54BBBBB00140.51 BB00
0542f8n_I_DA54_DA55NANNANT00.57 BB05
0552f8n_I_DA55_DA56NANNANT00.74 BB03
0562f8n_I_DA56_DA57B12BB04610.34 BB04
0572f8n_I_DA57_DG58B12BB04530.32 BB04
0582f8n_I_DG58_DG59miBBB13910.27 BB13
0592f8n_I_DG59_DC60BBBBB00310.42 BB00
0602f8n_I_DC60_DA61BBBBB00690.20 BB00
0612f8n_I_DA61_DT62BBBBB00360.34 BB00
0622f8n_I_DT62_DG63BBBBB00780.19 BB00
0632f8n_I_DG63_DT64B12BB04840.22 BB04
0642f8n_I_DT64_DT65BBBBB00720.26 BB00
0652f8n_I_DT65_DC66BBBBB00410.21 BB00
0662f8n_I_DC66_DA67BB2BB07590.24 BB07
0672f8n_I_DA67_DG68BBBBB00630.27 BB00
0682f8n_I_DG68_DC69BB2BB07810.20 BB07
0692f8n_I_DC69_DG70B12BB04680.34 BB04
0702f8n_I_DG70_DG71BBBBB00880.16 BB00
0712f8n_I_DG71_DA72B12BB04790.15 BB04
0722f8n_I_DA72_DA73BBBBB00660.16 BB00
0732f8n_I_DA73_DT74B12BB04760.27 BB04
0742f8n_I_DT74_DC75BBBBB00780.24 BB00
0752f8n_I_DC75_DC76B12BB04630.32 BB04
0762f8n_I_DC76_DG77BB2BB07640.20 BB07
0772f8n_I_DG77_DC78BBBBB00870.12 BB00
0782f8n_I_DC78_DT79BB2BB07640.28 BB07
0792f8n_I_DT79_DG80BBwBB11820.35 BB11
0802f8n_I_DG80_DA81B12BB04670.29 BB04
0812f8n_I_DA81_DA82BBBBB00950.13 BB00
0822f8n_I_DA82_DC83BBBBB00830.21 BB00
0832f8n_I_DC83_DA84BB2BB07620.30 BB07
0842f8n_I_DA84_DT85BBBBB00860.25 BB00
0852f8n_I_DT85_DG86BBBBB00860.19 BB00
0862f8n_I_DG86_DC87BBBBB00820.25 BB00
0872f8n_I_DC87_DC88BB2BB07640.39 BB07
0882f8n_I_DC88_DT89BBBBB00790.23 BB00
0892f8n_I_DT89_DT90BB2BB07570.24 BB07
0902f8n_I_DT90_DT91BBBBB00450.20 BB00
0912f8n_I_DT91_DT92BBBBB00810.12 BB00
0922f8n_I_DT92_DG93BBBBB00660.25 BB00
0932f8n_I_DG93_DA94miBBB10600.46 BB10
0942f8n_I_DA94_DT95BBBBB0090.53 BB00
0952f8n_I_DT95_DG96B12BB04710.28 BB04
0962f8n_I_DG96_DG97BBBBB00730.26 BB00
0972f8n_I_DG97_DA98BBBBB00780.12 BB00
0982f8n_I_DA98_DG99BB2BB07620.25 BB07
0992f8n_I_DG99_DC100BBBBB00690.22 BB00
1002f8n_I_DC100_DA101BB2BB07910.15 BB07
1012f8n_I_DA101_DG102BBBBB00900.13 BB00
1022f8n_I_DG102_DT103B12BB04890.22 BB04
1032f8n_I_DT103_DT104BBBBB00920.20 BB00
1042f8n_I_DT104_DT105B12BB04810.29 BB04
1052f8n_I_DT105_DC106B12BB04620.32 BB04
1062f8n_I_DC106_DC107BBBBB00770.24 BB00
1072f8n_I_DC107_DA108BB2BB07590.36 BB07
1082f8n_I_DA108_DA109NANNANT00.30 BB07
1092f8n_I_DA109_DA110BBBBB00740.27 BB00
1102f8n_I_DA110_DT111B12BB04830.16 BB04
1112f8n_I_DT111_DA112BBBBB00790.27 BB00
1122f8n_I_DA112_DC113miBBB13790.21 BB13
1132f8n_I_DC113_DA114BBBBB00410.62 BB00
1142f8n_I_DA114_DC115BBBBB00770.23 BB00
1152f8n_I_DC115_DT116BBBBB00680.34 BB00
1162f8n_I_DT116_DT117BBBBB00830.21 BB00
1172f8n_I_DT117_DT118BBBBB00720.25 BB00
1182f8n_I_DT118_DT119miBBB12350.38 BB12
1192f8n_I_DT119_DG120BBwBB16230.54 BB16
1202f8n_I_DG120_DG121BBBBB00690.22 BB00
1212f8n_I_DG121_DT122BBBBB00880.22 BB00
1222f8n_I_DT122_DA123B12BB04880.17 BB04
1232f8n_I_DA123_DG124BBBBB00770.28 BB00
1242f8n_I_DG124_DA125BB2BB07500.19 BB07
1252f8n_I_DA125_DA126B12BB04750.27 BB04
1262f8n_I_DA126_DT127BBBBB00730.34 BB00
1272f8n_I_DT127_DC128BBBBB00780.31 BB00
1282f8n_I_DC128_DT129BBBBB00460.41 BB00
1292f8n_I_DT129_DG130BB2BB07460.32 BB07
1302f8n_I_DG130_DC131NANNANT00.24 BB00
1312f8n_I_DC131_DA132BB2BB07410.43 BB07
1322f8n_I_DA132_DG133NANNANT00.39 BB02
1332f8n_I_DG133_DG134NANNANT00.53 BB00
1342f8n_I_DG134_DT135BBBBB00740.30 BB00
1352f8n_I_DT135_DG136BBBBB00790.27 BB00
1362f8n_I_DG136_DG137B12BB04830.21 BB04
1372f8n_I_DG137_DA138BBBBB00560.41 BB00
1382f8n_I_DA138_DT139BBBBB00670.33 BB00
1392f8n_I_DT139_DA140B12BB04670.21 BB04
1402f8n_I_DA140_DT141BBBBB00770.22 BB00
1412f8n_I_DT141_DT142BBBBB00910.16 BB00
1422f8n_I_DT142_DG143BBBBB00920.15 BB00
1432f8n_I_DG143_DA144B12BB04810.24 BB04
1442f8n_I_DA144_DT145BBBBB00740.21 BB00
1452f8n_J_DA146_DT147BBBBB00490.41 BB00
1462f8n_J_DT147_DC148miBBB13700.45 BB13
1472f8n_J_DC148_DA149NANNANT00.89 AB02
1482f8n_J_DA149_DA150B12BB04780.21 BB04
1492f8n_J_DA150_DT151BBwBB02740.14 BB02
1502f8n_J_DT151_DA152B12BB04560.29 BB04
1512f8n_J_DA152_DT153BBBBB00770.20 BB00
1522f8n_J_DT153_DC154B12BB04790.16 BB04
1532f8n_J_DC154_DC155B12BB04750.29 BB04
1542f8n_J_DC155_DA156B12BB04810.27 BB04
1552f8n_J_DA156_DC157BBBBB00690.32 BB00
1562f8n_J_DC157_DC158B12BB04880.21 BB04
1572f8n_J_DC158_DT159B12BB04830.31 BB04
1582f8n_J_DT159_DG160BB2BB07100.56 BB07
1592f8n_J_DG160_DC161BBBBB00120.33 BB00
1602f8n_J_DC161_DA162BB2BB07480.49 BB07
1612f8n_J_DA162_DG163BBBBB00700.23 BB00
1622f8n_J_DG163_DA164B12BB04930.17 BB04
1632f8n_J_DA164_DT165BBBBB00820.20 BB00
1642f8n_J_DT165_DT166BBBBB00940.13 BB00
1652f8n_J_DT166_DC167B12BB04820.22 BB04
1662f8n_J_DC167_DT168BBBBB00760.33 BB00
1672f8n_J_DT168_DA169B12BB04710.32 BB04
1682f8n_J_DA169_DC170NANNANT00.57 BB11
1692f8n_J_DC170_DC171NANNANT00.52 BB16
1702f8n_J_DC171_DA172BB2BB07510.41 BB07
1712f8n_J_DA172_DA173BBBBB00440.36 BB00
1722f8n_J_DA173_DA174B12BB04780.25 BB04
1732f8n_J_DA174_DA175BBBBB00830.23 BB00
1742f8n_J_DA175_DG176BBBBB00720.27 BB00
1752f8n_J_DG176_DT177BBBBB00600.38 BB00
1762f8n_J_DT177_DG178BBBBB00930.14 BB00
1772f8n_J_DG178_DT179BBBBB00900.19 BB00
1782f8n_J_DT179_DA180BBBBB00870.19 BB00
1792f8n_J_DA180_DT181BBBBB00760.20 BB00
1802f8n_J_DT181_DT182BBBBB00790.29 BB00
1812f8n_J_DT182_DT183BBBBB00630.25 BB00
1822f8n_J_DT183_DG184BB2BB07230.48 BB07
1832f8n_J_DG184_DG185BB2BB07340.36 BB07
1842f8n_J_DG185_DA186BBBBB00700.29 BB00
1852f8n_J_DA186_DA187BBBBB00890.23 BB00
1862f8n_J_DA187_DA188B12BB04830.19 BB04
1872f8n_J_DA188_DC189BBBBB00700.34 BB00
1882f8n_J_DC189_DT190B12BB04760.23 BB04
1892f8n_J_DT190_DG191BBBBB00770.35 BB00
1902f8n_J_DG191_DC192BB2BB07490.34 BB07
1912f8n_J_DC192_DT193BBBBB00700.25 BB00
1922f8n_J_DT193_DC194BB2BB07540.18 BB07
1932f8n_J_DC194_DC195BBBBB00880.21 BB00
1942f8n_J_DC195_DA196BBBBB00720.19 BB00
1952f8n_J_DA196_DT197BBwBB02740.35 BB02
1962f8n_J_DT197_DC198BBBBB00730.39 BB00
1972f8n_J_DC198_DA199miBBB10510.30 BB10
1982f8n_J_DA199_DA200B12BB04800.10 BB04
1992f8n_J_DA200_DA201BBBBB00480.31 BB00
2002f8n_J_DA201_DA202BB2BB07450.33 BB07
2012f8n_J_DA202_DG203BB2BB07460.21 BB07
2022f8n_J_DG203_DG204BBBBB00920.13 BB00
2032f8n_J_DG204_DC205B12BB04530.17 BB04
2042f8n_J_DC205_DA206BBBBB00700.21 BB00
2052f8n_J_DA206_DT207BBBBB00840.23 BB00
2062f8n_J_DT207_DG208BBBBB00880.17 BB00
2072f8n_J_DG208_DT209BBBBB00890.21 BB00
2082f8n_J_DT209_DT210BBBBB00530.25 BB00
2092f8n_J_DT210_DC211B12BB04510.27 BB04
2102f8n_J_DC211_DA212BB2BB07940.23 BB07
2112f8n_J_DA212_DG213BBBBB00870.21 BB00
2122f8n_J_DG213_DC214BB2BB07680.24 BB07
2132f8n_J_DC214_DG215BBBBB00710.26 BB00
2142f8n_J_DG215_DG216BBBBB00410.27 BB00
2152f8n_J_DG216_DA217B12BB04870.14 BB04
2162f8n_J_DA217_DT218BBBBB00720.28 BB00
2172f8n_J_DT218_DT219B12BB04620.36 BB04
2182f8n_J_DT219_DC220BBBBB00820.29 BB00
2192f8n_J_DC220_DC221BBBBB00810.23 BB00
2202f8n_J_DC221_DG222BB2BB07750.32 BB07
2212f8n_J_DG222_DC223BBBBB00840.16 BB00
2222f8n_J_DC223_DT224BB2BB07400.31 BB07
2232f8n_J_DT224_DG225BBwBB11670.42 BB11
2242f8n_J_DG225_DA226B12BB04670.34 BB04
2252f8n_J_DA226_DA227BBBBB00930.21 BB00
2262f8n_J_DA227_DC228BBBBB00640.23 BB00
2272f8n_J_DC228_DA229B12BB04580.20 BB04
2282f8n_J_DA229_DT230BBBBB00500.40 BB00
2292f8n_J_DT230_DG231B12BB04860.19 BB04
2302f8n_J_DG231_DC232BBBBB00830.26 BB00
2312f8n_J_DC232_DC233BB2BB07580.30 BB07
2322f8n_J_DC233_DT234BBBBB00160.33 BB00
2332f8n_J_DT234_DT235B12BB04600.28 BB04
2342f8n_J_DT235_DT236BBBBB00780.28 BB00
2352f8n_J_DT236_DT237BBBBB00710.21 BB00
2362f8n_J_DT237_DG238B12BB04410.44 BB04
2372f8n_J_DG238_DA239B12BB04910.14 BB04
2382f8n_J_DA239_DT240BBBBB00860.20 BB00
2392f8n_J_DT240_DG241NANNANT00.81 BB11
2402f8n_J_DG241_DG242NANNANT00.82 BB07
2412f8n_J_DG242_DA243NANNANT00.33 BB04
2422f8n_J_DA243_DG244B12BB04610.32 BB04
2432f8n_J_DG244_DC245BBBBB00680.34 BB00
2442f8n_J_DC245_DA246NANNANT00.48 BB08
2452f8n_J_DA246_DG247BBBBB00590.49 BB00
2462f8n_J_DG247_DT248BBBBB00320.57 BB00
2472f8n_J_DT248_DT249BBBBB00910.12 BB00
2482f8n_J_DT249_DT250BBBBB00960.17 BB00
2492f8n_J_DT250_DC251B12BB04840.18 BB04
2502f8n_J_DC251_DC252BBBBB00720.36 BB00
2512f8n_J_DC252_DA253BB2BB07870.21 BB07
2522f8n_J_DA253_DA254B12BB04690.23 BB04
2532f8n_J_DA254_DA255BBBBB00840.20 BB00
2542f8n_J_DA255_DT256BBwBB02560.35 BB02
2552f8n_J_DT256_DA257BBBBB00600.32 BB00
2562f8n_J_DA257_DC258BBBBB00880.17 BB00
2572f8n_J_DC258_DA259BBBBB00680.44 BB00
2582f8n_J_DA259_DC260BBwBB02360.38 BB02
2592f8n_J_DC260_DT261BBBBB00700.25 BB00
2602f8n_J_DT261_DT262BBBBB00670.35 BB00
2612f8n_J_DT262_DT263BBBBB00800.26 BB00
2622f8n_J_DT263_DT264BBBBB00880.21 BB00
2632f8n_J_DT264_DG265BB2BB07520.32 BB07
2642f8n_J_DG265_DG266BBwBB03700.39 BB03
2652f8n_J_DG266_DT267BBBBB00910.17 BB00
2662f8n_J_DT267_DA268BBBBB00790.32 BB00
2672f8n_J_DA268_DG269BBBBB00920.11 BB00
2682f8n_J_DG269_DA270BBBBB00810.16 BB00
2692f8n_J_DA270_DA271B12BB04880.17 BB04
2702f8n_J_DA271_DT272BBBBB00880.19 BB00
2712f8n_J_DT272_DC273B12BB04850.26 BB04
2722f8n_J_DC273_DT274BBBBB00630.31 BB00
2732f8n_J_DT274_DG275BB2BB07550.29 BB07
2742f8n_J_DG275_DC276BBBBB00850.18 BB00
2752f8n_J_DC276_DA277BB2BB07820.31 BB07
2762f8n_J_DA277_DG278BBBBB00650.20 BB00
2772f8n_J_DG278_DG279BBBBB00880.21 BB00
2782f8n_J_DG279_DT280BBBBB00120.54 BB00
2792f8n_J_DT280_DG281BBBBB00380.44 BB00
2802f8n_J_DG281_DG282BBBBB00760.21 BB00
2812f8n_J_DG282_DA283B12BB04630.27 BB04
2822f8n_J_DA283_DT284BBBBB00400.46 BB00
2832f8n_J_DT284_DA285BBBBB00740.29 BB00
2842f8n_J_DA285_DT286BBBBB00610.38 BB00
2852f8n_J_DT286_DT287BBwBB02600.21 BB02
2862f8n_J_DT287_DG288BBBBB00670.19 BB00
2872f8n_J_DG288_DA289B12BB04770.21 BB04
2882f8n_J_DA289_DT290BBBBB00530.24 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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