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Conformers: ABBIImiBZICOPNSYNN
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Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus

Results of the assignment of 143 detected steps in 13 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012f87-m10_A_G1_G2AAAAA08620.31 AA08
0022f87-m11_A_G1_G2AAAAA08590.32 AA08
0032f87-m12_A_G1_G2AAAAA08550.33 AA08
0042f87-m13_A_G1_G2AAAAA08630.29 AA08
0052f87-m1_A_G1_G2AAAAA08570.32 AA08
0062f87-m2_A_G1_G2AAAAA08580.32 AA08
0072f87-m3_A_G1_G2AAAAA08640.30 AA08
0082f87-m4_A_G1_G2AAAAA08600.32 AA08
0092f87-m5_A_G1_G2AAAAA08600.31 AA08
0102f87-m6_A_G1_G2AAAAA08590.32 AA08
0112f87-m7_A_G1_G2AAAAA08590.32 AA08
0122f87-m8_A_G1_G2NANNANT00.90 AAS1
0132f87-m9_A_G1_G2NANNANT00.75 AAS1
0142f87-m10_A_G2_C3AAAAA00360.38 AA00
0152f87-m11_A_G2_C3AAAAA00450.32 AA00
0162f87-m12_A_G2_C3AAAAA00440.33 AA00
0172f87-m13_A_G2_C3AAAAA00330.37 AA00
0182f87-m1_A_G2_C3AAAAA00440.32 AA00
0192f87-m2_A_G2_C3AAAAA00460.32 AA00
0202f87-m3_A_G2_C3AAAAA00400.37 AA00
0212f87-m4_A_G2_C3AAAAA00380.31 AA00
0222f87-m5_A_G2_C3AAAAA00420.35 AA00
0232f87-m6_A_G2_C3AAAAA00420.30 AA00
0242f87-m7_A_G2_C3AAAAA00370.38 AA00
0252f87-m8_A_G2_C3AAAAA00460.34 AA00
0262f87-m9_A_G2_C3AAAAA00460.46 AA00
0272f87-m10_A_C3_U4NANNANT00.95 BA16
0282f87-m11_A_C3_U4AAwAA11570.47 AA11
0292f87-m12_A_C3_U4AAwAA11500.53 AA11
0302f87-m13_A_C3_U4NANNANT00.84 AA10
0312f87-m1_A_C3_U4NANNANT00.51 AA11
0322f87-m2_A_C3_U4AAwAA11610.43 AA11
0332f87-m3_A_C3_U4AAwAA01480.42 AA01
0342f87-m4_A_C3_U4NANNANT00.66 AA11
0352f87-m5_A_C3_U4AAAAA08850.30 AA08
0362f87-m6_A_C3_U4NANNANT00.76 AA11
0372f87-m7_A_C3_U4NANNANT00.81 AA10
0382f87-m8_A_C3_U4AAAAA08860.28 AA08
0392f87-m9_A_C3_U4NANNANT00.86 AA10
0402f87-m10_A_U4_G5AAAAA00490.34 AA00
0412f87-m11_A_U4_G5AAAAA08240.65 AA08
0422f87-m12_A_U4_G5NANNANT01.01 AA05
0432f87-m13_A_U4_G5NANNANT00.98 AA01
0442f87-m1_A_U4_G5NANNANT01.04 AA05
0452f87-m2_A_U4_G5AAAAA08420.60 AA08
0462f87-m3_A_U4_G5NANNANT01.16 BA16
0472f87-m4_A_U4_G5AAAAA00370.53 AA00
0482f87-m5_A_U4_G5NANNANT00.77 AA10
0492f87-m6_A_U4_G5NANNANT00.81 AA01
0502f87-m7_A_U4_G5NANNANT00.74 AA01
0512f87-m8_A_U4_G5NANNANT00.96 BA16
0522f87-m9_A_U4_G5NANNANT01.01 AA05
0532f87-m10_A_G5_A6OPNOP04530.24 OP04
0542f87-m11_A_G5_A6OPNOP04200.31 OP04
0552f87-m12_A_G5_A6OPNOP04550.27 OP04
0562f87-m13_A_G5_A6OPNOP04160.43 OP04
0572f87-m1_A_G5_A6OPNOP04640.20 OP04
0582f87-m2_A_G5_A6OPNOP04280.29 OP04
0592f87-m3_A_G5_A6OPNOP04330.27 OP04
0602f87-m4_A_G5_A6OPNOP04630.25 OP04
0612f87-m5_A_G5_A6OPNOP04500.17 OP04
0622f87-m6_A_G5_A6OPNOP04570.22 OP04
0632f87-m7_A_G5_A6OPNOP04670.18 OP04
0642f87-m8_A_G5_A6OPNOP04580.21 OP04
0652f87-m9_A_G5_A6OPNOP04630.21 OP04
0662f87-m10_A_A6_A7AAAAA00390.37 AA00
0672f87-m11_A_A6_A7AAwAA01540.30 AA01
0682f87-m12_A_A6_A7AAAAA00560.30 AA00
0692f87-m13_A_A6_A7AAAAA00600.28 AA00
0702f87-m1_A_A6_A7AAAAA00510.33 AA00
0712f87-m2_A_A6_A7AAAAA00510.32 AA00
0722f87-m3_A_A6_A7AAAAA00590.22 AA00
0732f87-m4_A_A6_A7AAAAA00360.38 AA00
0742f87-m5_A_A6_A7AAAAA00750.20 AA00
0752f87-m6_A_A6_A7AAAAA00600.27 AA00
0762f87-m7_A_A6_A7AAAAA00640.20 AA00
0772f87-m8_A_A6_A7AAAAA00610.27 AA00
0782f87-m9_A_A6_A7AAAAA00520.32 AA00
0792f87-m10_A_A7_G8AAwAA01630.33 AA01
0802f87-m11_A_A7_G8AAwAA01760.33 AA01
0812f87-m12_A_A7_G8NANNANT00.67 AA10
0822f87-m13_A_A7_G8NANNANT00.67 AA10
0832f87-m1_A_A7_G8AAwAA01770.31 AA01
0842f87-m2_A_A7_G8AAwAA01750.31 AA01
0852f87-m3_A_A7_G8AAwAA01760.35 AA01
0862f87-m4_A_A7_G8AAwAA01540.35 AA01
0872f87-m5_A_A7_G8NANNANT00.62 BA09
0882f87-m6_A_A7_G8AAwAA01770.33 AA01
0892f87-m7_A_A7_G8NANNANT00.56 AA10
0902f87-m8_A_A7_G8AAAAA00620.23 AA00
0912f87-m9_A_A7_G8AAwAA01790.31 AA01
0922f87-m10_A_G8_G9NANNANT01.64 OP24
0932f87-m11_A_G8_G9NANNANT00.78 AA05
0942f87-m12_A_G8_G9NANNANT01.11 AA04
0952f87-m13_A_G8_G9AAAAA0890.79 AA08
0962f87-m1_A_G8_G9NANNANT00.68 AA05
0972f87-m2_A_G8_G9NANNANT00.65 AA05
0982f87-m3_A_G8_G9NANNANT00.68 AA05
0992f87-m4_A_G8_G9AAAAA00140.62 AA00
1002f87-m5_A_G8_G9NANNANT00.80 AA05
1012f87-m6_A_G8_G9NANNANT00.68 AA05
1022f87-m7_A_G8_G9NANNANT00.81 AA05
1032f87-m8_A_G8_G9NANNANT00.78 AA00
1042f87-m9_A_G8_G9NANNANT00.67 AA05
1052f87-m10_A_G9_G10AAAAA00830.16 AA00
1062f87-m11_A_G9_G10NANNANT00.59 AB02
1072f87-m12_A_G9_G10AAAAA00560.23 AA00
1082f87-m13_A_G9_G10NANNANT00.58 AB02
1092f87-m1_A_G9_G10AAAAA00770.18 AA00
1102f87-m2_A_G9_G10AAAAA00770.17 AA00
1112f87-m3_A_G9_G10AAAAA00660.23 AA00
1122f87-m4_A_G9_G10AAAAA00590.22 AA00
1132f87-m5_A_G9_G10AAAAA00610.24 AA00
1142f87-m6_A_G9_G10AAAAA00730.20 AA00
1152f87-m7_A_G9_G10AAAAA00690.19 AA00
1162f87-m8_A_G9_G10AAAAA00630.17 AA00
1172f87-m9_A_G9_G10AAAAA00830.12 AA00
1182f87-m10_A_G10_C11AAAAA00510.32 AA00
1192f87-m11_A_G10_C11AAAAA00570.28 AA00
1202f87-m12_A_G10_C11AAAAA00550.29 AA00
1212f87-m13_A_G10_C11AAAAA00550.30 AA00
1222f87-m1_A_G10_C11AAAAA00530.28 AA00
1232f87-m2_A_G10_C11AAAAA00520.28 AA00
1242f87-m3_A_G10_C11AAAAA00590.29 AA00
1252f87-m4_A_G10_C11AAAAA00560.28 AA00
1262f87-m5_A_G10_C11AAAAA00590.27 AA00
1272f87-m6_A_G10_C11AAAAA00520.31 AA00
1282f87-m7_A_G10_C11AAAAA00520.28 AA00
1292f87-m8_A_G10_C11AAAAA00320.37 AA00
1302f87-m9_A_G10_C11AAAAA00360.36 AA00
1312f87-m10_A_C11_C12NANNANT00.59 AA10
1322f87-m11_A_C11_C12AAAAA00720.24 AA00
1332f87-m12_A_C11_C12AAwAA01550.23 AA01
1342f87-m13_A_C11_C12NANNANT00.61 AA10
1352f87-m1_A_C11_C12AAAAA00650.24 AA00
1362f87-m2_A_C11_C12AAAAA00650.24 AA00
1372f87-m3_A_C11_C12AAwAA01660.20 AA01
1382f87-m4_A_C11_C12AAAAA00700.24 AA00
1392f87-m5_A_C11_C12AAAAA00700.24 AA00
1402f87-m6_A_C11_C12AAwAA01500.24 AA01
1412f87-m7_A_C11_C12AAAAA00640.26 AA00
1422f87-m8_A_C11_C12NANNANT00.95 ZZ01
1432f87-m9_A_C11_C12NANNANT01.06 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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