Conformers:
ABBIImiBZICOPNSYNN
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Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2f5q_B_DT2_DA3 | B12 | BB04 | 59 | 0.37 |
| 02 | 2f5q_B_DA3_DG4 | BBw | BB02 | 23 | 0.42 |
| 03 | 2f5q_B_DG4_DA5 | BBw | BB03 | 91 | 0.16 |
| 04 | 2f5q_B_DA5_DC6 | NAN | NANT | 0 | 0.78 |
| 05 | 2f5q_B_DC6_DC7 | NAN | NANT | 0 | 0.50 |
| 06 | 2f5q_B_DC7_DT8 | BBB | BB00 | 63 | 0.25 |
| 07 | 2f5q_B_DT8_DG9 | B12 | BB04 | 87 | 0.18 |
| 08 | 2f5q_B_DG9_DG10 | B12 | BB04 | 93 | 0.17 |
| 09 | 2f5q_B_DG10_DA11 | BBB | BB00 | 47 | 0.40 |
| 10 | 2f5q_C_DT14_DC15 | BBB | BB00 | 41 | 0.43 |
| 11 | 2f5q_C_DC15_DC16 | BBB | BB00 | 28 | 0.36 |
| 12 | 2f5q_C_DC16_DA17 | BBB | BB00 | 54 | 0.32 |
| 13 | 2f5q_C_DA17_8OG18 | NAN | NANT | 0 | 1.22 |
| 14 | 2f5q_C_8OG18_DG19 | NAN | NANT | 0 | 0.97 |
| 15 | 2f5q_C_DG19_DT20 | BBw | BB02 | 69 | 0.18 |
| 16 | 2f5q_C_DT20_DC21 | B12 | BB05 | 53 | 0.41 |
| 17 | 2f5q_C_DC21_DT22 | BBB | BB00 | 62 | 0.36 |
| 18 | 2f5q_C_DT22_DA23 | B12 | BB04 | 22 | 0.61 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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