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Conformers: ABBIImiBZICOPNSYNN
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A-site RNA in complex with neamine

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012f4s_A_G1403_C1404AAwAA01610.29 AA01
022f4s_A_C1404_G1405AAAAA08590.25 AA08
032f4s_A_G1405_U1406NANNANT01.48 IC07
042f4s_A_U1406_C1407NANNANT01.69 OP01
052f4s_A_C1407_A1408AAAAA00720.25 AA00
062f4s_A_A1408_C1409AAAAA00800.24 AA00
072f4s_A_C1409_A1410AAAAA00810.17 AA00
082f4s_A_A1410_C1411AAAAA00780.28 AA00
092f4s_A_C1411_C1412AAAAA00570.29 AA00
102f4s_A_C1412_G1488AAAAA00910.17 AA00
112f4s_A_G1488_G1489AAAAA00920.11 AA00
122f4s_A_G1489_U1490AAAAA00890.20 AA00
132f4s_A_U1490_G1491AAAAA00920.21 AA00
142f4s_A_G1491_A1492NANNANT01.38 OP29
152f4s_A_A1492_A1493NANNANT01.30 OP25
162f4s_A_A1493_G1494NANNANT00.91 OP30
172f4s_A_G1494_U1495AAuAA12590.39 AA12
182f4s_A_U1495_C1496AAAAA00700.35 AA00
192f4s_A_C1496_G1497AAAAA00850.18 AA00
202f4s_A_G1497_C1498AAAAA00770.24 AA00
212f4s_B_G1403_C1404AAAAA00650.15 AA00
222f4s_B_C1404_G1405AAAAA00780.23 AA00
232f4s_B_G1405_U1406AAwAA01670.21 AA01
242f4s_B_U1406_C1407AAwAA11940.23 AA11
252f4s_B_C1407_A1408AAAAA08320.33 AA08
262f4s_B_A1408_C1409AAAAA00550.24 AA00
272f4s_B_C1409_A1410AAAAA00910.15 AA00
282f4s_B_A1410_C1411AAAAA00790.18 AA00
292f4s_B_C1411_C1412AAAAA00660.20 AA00
302f4s_B_C1412_G1488AAAAA00720.20 AA00
312f4s_B_G1488_G1489AAAAA00840.20 AA00
322f4s_B_G1489_U1490AAAAA00830.23 AA00
332f4s_B_U1490_G1491AAAAA00850.24 AA00
342f4s_B_G1491_A1492NANNANT01.42 OP29
352f4s_B_A1492_A1493AAAAA09940.15 AA09
362f4s_B_A1493_G1494NANNANT00.82 OP11
372f4s_B_G1494_U1495AAAAA00670.28 AA00
382f4s_B_U1495_C1496AAwAA01820.24 AA01
392f4s_B_C1496_G1497AAAAA08760.23 AA08
402f4s_B_G1497_C1498AAAAA00790.21 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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