Conformers:
ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF A COMPLEX OF THE THIRD DNA BINDING DOMAIN OF HUMAN HMG-I(Y) BOUND TO DNA DODECAMER CONTAINING THE PRDII SITE OF THE INTERFERON-BETA PROMOTER, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ezf_B_DG301_DG302 | BBB | BB00 | 33 | 0.47 |
| 02 | 2ezf_B_DG302_DG303 | BBB | BB00 | 87 | 0.22 |
| 03 | 2ezf_B_DG303_DA304 | BBB | BB00 | 83 | 0.21 |
| 04 | 2ezf_B_DA304_DA305 | BBB | BB00 | 78 | 0.21 |
| 05 | 2ezf_B_DA305_DA306 | BBB | BB00 | 75 | 0.30 |
| 06 | 2ezf_B_DA306_DT307 | BBB | BB01 | 75 | 0.24 |
| 07 | 2ezf_B_DT307_DT308 | BBB | BB01 | 57 | 0.26 |
| 08 | 2ezf_B_DT308_DC309 | BBB | BB00 | 42 | 0.31 |
| 09 | 2ezf_B_DC309_DC310 | BBB | BB01 | 78 | 0.20 |
| 10 | 2ezf_B_DC310_DT311 | BBB | BB01 | 60 | 0.23 |
| 11 | 2ezf_B_DT311_DC312 | BBB | BB01 | 79 | 0.21 |
| 12 | 2ezf_C_DG313_DA314 | BBB | BB00 | 75 | 0.35 |
| 13 | 2ezf_C_DA314_DG315 | BBB | BB00 | 77 | 0.20 |
| 14 | 2ezf_C_DG315_DG316 | BBB | BB00 | 76 | 0.28 |
| 15 | 2ezf_C_DG316_DA317 | BBB | BB00 | 84 | 0.21 |
| 16 | 2ezf_C_DA317_DA318 | BBB | BB00 | 79 | 0.21 |
| 17 | 2ezf_C_DA318_DT319 | BBB | BB01 | 84 | 0.17 |
| 18 | 2ezf_C_DT319_DT320 | BBB | BB01 | 86 | 0.17 |
| 19 | 2ezf_C_DT320_DT321 | BBB | BB01 | 71 | 0.21 |
| 20 | 2ezf_C_DT321_DC322 | BBB | BB01 | 38 | 0.28 |
| 21 | 2ezf_C_DC322_DC323 | BBB | BB01 | 75 | 0.17 |
| 22 | 2ezf_C_DC323_DC324 | BBB | BB01 | 69 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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