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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ez6_C_A1_A2AAAAA00710.18 AA00
022ez6_C_A2_A3AAAAA00800.19 AA00
032ez6_C_A3_G4AAAAA00900.12 AA00
042ez6_C_G4_G5AAAAA00940.14 AA00
052ez6_C_G5_U6AAAAA00690.24 AA00
062ez6_C_U6_C7AAAAA00720.24 AA00
072ez6_C_C7_A8AAAAA00950.15 AA00
082ez6_C_A8_U9AAAAA00750.20 AA00
092ez6_C_U9_U10AAAAA00920.16 AA00
102ez6_C_U10_C11AAAAA00860.20 AA00
112ez6_C_C11_G12AAAAA00690.32 AA00
122ez6_C_G12_C13NANNANT02.00 OP17
132ez6_C_C13_A14AAAAA08620.53 AA08
142ez6_C_A14_A15AAAAA00550.32 AA00
152ez6_C_A15_G16AAAAA08160.68 AA08
162ez6_C_G16_A17AAAAA00840.22 AA00
172ez6_C_A17_G18AAAAA00870.18 AA00
182ez6_C_G18_U19AAAAA00930.17 AA00
192ez6_C_U19_G20AAAAA00860.11 AA00
202ez6_C_G20_G21AAAAA00700.25 AA00
212ez6_C_G21_C22AAAAA00890.22 AA00
222ez6_C_C22_C23AAAAA00950.12 AA00
232ez6_C_C23_U24AAAAA00870.16 AA00
242ez6_C_U24_U25AAAAA00800.18 AA00
252ez6_C_U25_U26AAAAA00960.18 AA00
262ez6_C_U26_A27AAAAA00940.15 AA00
272ez6_C_A27_U28AAAAA00900.15 AA00
282ez6_D_A1_A2AAAAA00740.18 AA00
292ez6_D_A2_A3AAAAA00790.16 AA00
302ez6_D_A3_G4AAAAA00920.10 AA00
312ez6_D_G4_G5AAAAA00940.11 AA00
322ez6_D_G5_U6AAAAA00850.22 AA00
332ez6_D_U6_C7AAAAA00750.23 AA00
342ez6_D_C7_A8AAAAA00930.13 AA00
352ez6_D_A8_U9AAAAA00860.18 AA00
362ez6_D_U9_U10AAAAA00880.15 AA00
372ez6_D_U10_C11AAAAA00820.21 AA00
382ez6_D_C11_G12AAAAA00780.29 AA00
392ez6_D_G12_C13OPNOP03850.09 OP03
402ez6_D_C13_A14AAAAA08720.36 AA08
412ez6_D_A14_A15AAAAA00740.25 AA00
422ez6_D_A15_G16AAAAA08320.63 AA08
432ez6_D_G16_A17AAAAA00910.18 AA00
442ez6_D_A17_G18AAAAA00750.15 AA00
452ez6_D_G18_U19AAAAA00930.15 AA00
462ez6_D_U19_G20AAAAA00920.10 AA00
472ez6_D_G20_G21AAAAA00720.25 AA00
482ez6_D_G21_C22AAAAA00920.19 AA00
492ez6_D_C22_C23AAAAA00900.15 AA00
502ez6_D_C23_U24AAAAA00910.19 AA00
512ez6_D_U24_U25AAAAA00830.19 AA00
522ez6_D_U25_U26AAAAA00770.17 AA00
532ez6_D_U26_A27AAAAA00770.15 AA00
542ez6_D_A27_U28AAAAA08870.13 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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