DNATCO v4.1: results

GNYA tetranucleotide loops found in poliovirus oriL by in vivo SELEX (un)expectedly form a YNMG-like structure

Results of the assignment of 234 detected steps in 18 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2evy-m10_A_G1_G2	AAA	AA00	49	0.28	AA00
002	2evy-m11_A_G1_G2	AAA	AA00	47	0.28	AA00
003	2evy-m12_A_G1_G2	AAA	AA00	44	0.28	AA00
004	2evy-m13_A_G1_G2	AAA	AA00	57	0.28	AA00
005	2evy-m14_A_G1_G2	AAA	AA00	46	0.28	AA00
006	2evy-m15_A_G1_G2	AAA	AA00	44	0.29	AA00
007	2evy-m16_A_G1_G2	AAA	AA00	38	0.33	AA00
008	2evy-m17_A_G1_G2	AAA	AA00	57	0.27	AA00
009	2evy-m18_A_G1_G2	AAA	AA00	57	0.27	AA00
010	2evy-m1_A_G1_G2	AAA	AA00	49	0.28	AA00
011	2evy-m2_A_G1_G2	AAA	AA00	58	0.27	AA00
012	2evy-m3_A_G1_G2	AAA	AA00	46	0.28	AA00
013	2evy-m4_A_G1_G2	AAA	AA00	49	0.28	AA00
014	2evy-m5_A_G1_G2	AAA	AA00	49	0.27	AA00
015	2evy-m6_A_G1_G2	AAA	AA00	50	0.27	AA00
016	2evy-m7_A_G1_G2	AAA	AA00	47	0.28	AA00
017	2evy-m8_A_G1_G2	AAA	AA00	49	0.28	AA00
018	2evy-m9_A_G1_G2	AAA	AA00	50	0.27	AA00
019	2evy-m10_A_G2_U3	AAA	AA00	67	0.29	AA00
020	2evy-m11_A_G2_U3	AAA	AA00	68	0.29	AA00
021	2evy-m12_A_G2_U3	AAA	AA00	70	0.29	AA00
022	2evy-m13_A_G2_U3	AAA	AA00	70	0.29	AA00
023	2evy-m14_A_G2_U3	AAA	AA00	70	0.29	AA00
024	2evy-m15_A_G2_U3	AAA	AA00	70	0.29	AA00
025	2evy-m16_A_G2_U3	AAA	AA00	73	0.30	AA00
026	2evy-m17_A_G2_U3	AAA	AA00	68	0.29	AA00
027	2evy-m18_A_G2_U3	AAA	AA00	68	0.29	AA00
028	2evy-m1_A_G2_U3	AAA	AA00	64	0.29	AA00
029	2evy-m2_A_G2_U3	AAA	AA00	67	0.29	AA00
030	2evy-m3_A_G2_U3	AAA	AA00	67	0.29	AA00
031	2evy-m4_A_G2_U3	AAA	AA00	68	0.29	AA00
032	2evy-m5_A_G2_U3	AAA	AA00	67	0.29	AA00
033	2evy-m6_A_G2_U3	AAA	AA00	68	0.29	AA00
034	2evy-m7_A_G2_U3	AAA	AA00	68	0.28	AA00
035	2evy-m8_A_G2_U3	AAA	AA00	66	0.29	AA00
036	2evy-m9_A_G2_U3	AAA	AA00	67	0.29	AA00
037	2evy-m10_A_U3_A4	AAA	AA00	69	0.32	AA00
038	2evy-m11_A_U3_A4	AAA	AA00	71	0.32	AA00
039	2evy-m12_A_U3_A4	AAA	AA00	71	0.32	AA00
040	2evy-m13_A_U3_A4	AAA	AA00	72	0.32	AA00
041	2evy-m14_A_U3_A4	AAA	AA00	70	0.32	AA00
042	2evy-m15_A_U3_A4	AAA	AA00	70	0.32	AA00
043	2evy-m16_A_U3_A4	AAA	AA00	72	0.32	AA00
044	2evy-m17_A_U3_A4	AAA	AA00	70	0.32	AA00
045	2evy-m18_A_U3_A4	AAA	AA00	70	0.32	AA00
046	2evy-m1_A_U3_A4	AAA	AA00	68	0.31	AA00
047	2evy-m2_A_U3_A4	AAA	AA00	68	0.31	AA00
048	2evy-m3_A_U3_A4	AAA	AA00	70	0.32	AA00
049	2evy-m4_A_U3_A4	AAA	AA00	68	0.32	AA00
050	2evy-m5_A_U3_A4	AAA	AA00	71	0.32	AA00
051	2evy-m6_A_U3_A4	AAA	AA00	69	0.32	AA00
052	2evy-m7_A_U3_A4	AAA	AA00	67	0.31	AA00
053	2evy-m8_A_U3_A4	AAA	AA00	70	0.31	AA00
054	2evy-m9_A_U3_A4	AAA	AA00	69	0.32	AA00
055	2evy-m10_A_A4_U5	AAA	AA00	33	0.31	AA00
056	2evy-m11_A_A4_U5	AAA	AA00	30	0.33	AA00
057	2evy-m12_A_A4_U5	AAA	AA00	42	0.30	AA00
058	2evy-m13_A_A4_U5	AAA	AA00	46	0.29	AA00
059	2evy-m14_A_A4_U5	AAA	AA00	31	0.32	AA00
060	2evy-m15_A_A4_U5	AAA	AA00	27	0.33	AA00
061	2evy-m16_A_A4_U5	AAA	AA00	42	0.30	AA00
062	2evy-m17_A_A4_U5	AAA	AA00	30	0.33	AA00
063	2evy-m18_A_A4_U5	AAA	AA00	32	0.32	AA00
064	2evy-m1_A_A4_U5	AAA	AA00	41	0.30	AA00
065	2evy-m2_A_A4_U5	AAA	AA00	35	0.31	AA00
066	2evy-m3_A_A4_U5	AAA	AA00	42	0.29	AA00
067	2evy-m4_A_A4_U5	AAA	AA00	37	0.31	AA00
068	2evy-m5_A_A4_U5	AAA	AA00	43	0.29	AA00
069	2evy-m6_A_A4_U5	AAA	AA00	31	0.32	AA00
070	2evy-m7_A_A4_U5	AAA	AA00	31	0.32	AA00
071	2evy-m8_A_A4_U5	AAA	AA00	37	0.31	AA00
072	2evy-m9_A_A4_U5	AAA	AA00	35	0.31	AA00
073	2evy-m10_A_U5_G6	NAN	NANT	0	0.83	IC06
074	2evy-m11_A_U5_G6	NAN	NANT	0	0.81	IC06
075	2evy-m12_A_U5_G6	NAN	NANT	0	0.84	IC06
076	2evy-m13_A_U5_G6	NAN	NANT	0	0.83	IC06
077	2evy-m14_A_U5_G6	NAN	NANT	0	0.82	IC06
078	2evy-m15_A_U5_G6	NAN	NANT	0	0.82	IC06
079	2evy-m16_A_U5_G6	NAN	NANT	0	0.84	IC06
080	2evy-m17_A_U5_G6	NAN	NANT	0	0.82	IC06
081	2evy-m18_A_U5_G6	NAN	NANT	0	0.82	IC06
082	2evy-m1_A_U5_G6	NAN	NANT	0	0.84	IC06
083	2evy-m2_A_U5_G6	NAN	NANT	0	0.82	IC06
084	2evy-m3_A_U5_G6	NAN	NANT	0	0.82	IC06
085	2evy-m4_A_U5_G6	NAN	NANT	0	0.82	IC06
086	2evy-m5_A_U5_G6	NAN	NANT	0	0.83	IC06
087	2evy-m6_A_U5_G6	NAN	NANT	0	0.80	IC06
088	2evy-m7_A_U5_G6	NAN	NANT	0	0.82	IC06
089	2evy-m8_A_U5_G6	NAN	NANT	0	0.84	IC06
090	2evy-m9_A_U5_G6	NAN	NANT	0	0.84	IC06
091	2evy-m10_A_G6_C7	NAN	NANT	0	2.45	BB11
092	2evy-m11_A_G6_C7	NAN	NANT	0	1.68	OP15
093	2evy-m12_A_G6_C7	NAN	NANT	0	2.45	BB11
094	2evy-m13_A_G6_C7	NAN	NANT	0	1.69	OP15
095	2evy-m14_A_G6_C7	NAN	NANT	0	2.45	BB11
096	2evy-m15_A_G6_C7	NAN	NANT	0	2.45	BB11
097	2evy-m16_A_G6_C7	NAN	NANT	0	2.45	BB11
098	2evy-m17_A_G6_C7	NAN	NANT	0	2.45	BB11
099	2evy-m18_A_G6_C7	NAN	NANT	0	2.46	BB11
100	2evy-m1_A_G6_C7	NAN	NANT	0	2.35	AA12
101	2evy-m2_A_G6_C7	NAN	NANT	0	2.34	AA12
102	2evy-m3_A_G6_C7	NAN	NANT	0	2.35	AA12
103	2evy-m4_A_G6_C7	NAN	NANT	0	2.33	BA08
104	2evy-m5_A_G6_C7	NAN	NANT	0	2.32	BA08
105	2evy-m6_A_G6_C7	NAN	NANT	0	1.69	OP15
106	2evy-m7_A_G6_C7	NAN	NANT	0	1.73	OP15
107	2evy-m8_A_G6_C7	NAN	NANT	0	2.45	BB11
108	2evy-m9_A_G6_C7	NAN	NANT	0	2.45	BB11
109	2evy-m10_A_C7_U8	NAN	NANT	0	1.18	OP30
110	2evy-m11_A_C7_U8	NAN	NANT	0	1.21	OP30
111	2evy-m12_A_C7_U8	NAN	NANT	0	1.19	OP30
112	2evy-m13_A_C7_U8	NAN	NANT	0	1.19	OP30
113	2evy-m14_A_C7_U8	NAN	NANT	0	1.19	OP30
114	2evy-m15_A_C7_U8	NAN	NANT	0	1.21	OP30
115	2evy-m16_A_C7_U8	NAN	NANT	0	1.20	OP30
116	2evy-m17_A_C7_U8	NAN	NANT	0	1.21	OP30
117	2evy-m18_A_C7_U8	NAN	NANT	0	1.19	OP30
118	2evy-m1_A_C7_U8	NAN	NANT	0	1.83	IC07
119	2evy-m2_A_C7_U8	NAN	NANT	0	1.54	IC04
120	2evy-m3_A_C7_U8	NAN	NANT	0	1.85	IC07
121	2evy-m4_A_C7_U8	NAN	NANT	0	1.55	IC04
122	2evy-m5_A_C7_U8	NAN	NANT	0	1.63	IC04
123	2evy-m6_A_C7_U8	NAN	NANT	0	1.19	OP30
124	2evy-m7_A_C7_U8	NAN	NANT	0	1.56	IC04
125	2evy-m8_A_C7_U8	NAN	NANT	0	1.20	OP30
126	2evy-m9_A_C7_U8	NAN	NANT	0	1.18	OP30
127	2evy-m10_A_U8_A9	NAN	NANT	0	0.99	ZZ2S
128	2evy-m11_A_U8_A9	NAN	NANT	0	1.00	ZZ2S
129	2evy-m12_A_U8_A9	NAN	NANT	0	1.01	ZZ2S
130	2evy-m13_A_U8_A9	NAN	NANT	0	1.02	ZZ2S
131	2evy-m14_A_U8_A9	NAN	NANT	0	1.01	ZZ2S
132	2evy-m15_A_U8_A9	NAN	NANT	0	0.99	ZZ2S
133	2evy-m16_A_U8_A9	NAN	NANT	0	1.04	ZZ2S
134	2evy-m17_A_U8_A9	NAN	NANT	0	1.01	ZZ2S
135	2evy-m18_A_U8_A9	NAN	NANT	0	1.02	ZZ2S
136	2evy-m1_A_U8_A9	NAN	NANT	0	0.66	ZZ1S
137	2evy-m2_A_U8_A9	NAN	NANT	0	0.67	ZZ1S
138	2evy-m3_A_U8_A9	NAN	NANT	0	0.67	ZZ1S
139	2evy-m4_A_U8_A9	NAN	NANT	0	1.20	OP26
140	2evy-m5_A_U8_A9	NAN	NANT	0	1.42	BA16
141	2evy-m6_A_U8_A9	NAN	NANT	0	1.02	ZZ2S
142	2evy-m7_A_U8_A9	NAN	NANT	0	1.19	OP26
143	2evy-m8_A_U8_A9	NAN	NANT	0	1.03	ZZ2S
144	2evy-m9_A_U8_A9	NAN	NANT	0	1.00	ZZ2S
145	2evy-m10_A_A9_G10	NAN	NANT	0	0.91	BBS1
146	2evy-m11_A_A9_G10	NAN	NANT	0	0.92	BBS1
147	2evy-m12_A_A9_G10	NAN	NANT	0	0.92	BBS1
148	2evy-m13_A_A9_G10	NAN	NANT	0	0.91	BBS1
149	2evy-m14_A_A9_G10	NAN	NANT	0	0.91	BBS1
150	2evy-m15_A_A9_G10	NAN	NANT	0	0.92	BBS1
151	2evy-m16_A_A9_G10	NAN	NANT	0	0.92	BBS1
152	2evy-m17_A_A9_G10	NAN	NANT	0	0.92	BBS1
153	2evy-m18_A_A9_G10	NAN	NANT	0	0.91	BBS1
154	2evy-m1_A_A9_G10	NAN	NANT	0	0.77	BBS1
155	2evy-m2_A_A9_G10	NAN	NANT	0	0.74	BBS1
156	2evy-m3_A_A9_G10	NAN	NANT	0	0.78	BBS1
157	2evy-m4_A_A9_G10	NAN	NANT	0	0.92	BBS1
158	2evy-m5_A_A9_G10	NAN	NANT	0	0.70	BBS1
159	2evy-m6_A_A9_G10	NAN	NANT	0	0.93	BBS1
160	2evy-m7_A_A9_G10	NAN	NANT	0	0.94	BBS1
161	2evy-m8_A_A9_G10	NAN	NANT	0	0.92	BBS1
162	2evy-m9_A_A9_G10	NAN	NANT	0	0.92	BBS1
163	2evy-m10_A_G10_U11	AAA	AA00	44	0.40	AA00
164	2evy-m11_A_G10_U11	AAA	AA00	47	0.41	AA00
165	2evy-m12_A_G10_U11	AAA	AA00	48	0.40	AA00
166	2evy-m13_A_G10_U11	AAA	AA00	45	0.40	AA00
167	2evy-m14_A_G10_U11	AAA	AA00	44	0.41	AA00
168	2evy-m15_A_G10_U11	AAA	AA00	46	0.41	AA00
169	2evy-m16_A_G10_U11	AAA	AA00	43	0.38	AA00
170	2evy-m17_A_G10_U11	AAA	AA00	47	0.40	AA00
171	2evy-m18_A_G10_U11	AAA	AA00	44	0.41	AA00
172	2evy-m1_A_G10_U11	AAA	AA00	52	0.39	AA00
173	2evy-m2_A_G10_U11	AAA	AA00	47	0.40	AA00
174	2evy-m3_A_G10_U11	AAA	AA00	51	0.40	AA00
175	2evy-m4_A_G10_U11	AAA	AA00	44	0.41	AA00
176	2evy-m5_A_G10_U11	AAA	AA00	56	0.39	AA00
177	2evy-m6_A_G10_U11	AAA	AA00	47	0.40	AA00
178	2evy-m7_A_G10_U11	AAA	AA00	46	0.39	AA00
179	2evy-m8_A_G10_U11	AAA	AA00	45	0.38	AA00
180	2evy-m9_A_G10_U11	AAA	AA00	45	0.40	AA00
181	2evy-m10_A_U11_A12	AAA	AA00	35	0.37	AA00
182	2evy-m11_A_U11_A12	AAA	AA00	33	0.38	AA00
183	2evy-m12_A_U11_A12	AAA	AA00	33	0.38	AA00
184	2evy-m13_A_U11_A12	AAA	AA00	34	0.38	AA00
185	2evy-m14_A_U11_A12	AAA	AA00	35	0.37	AA00
186	2evy-m15_A_U11_A12	AAA	AA00	33	0.38	AA00
187	2evy-m16_A_U11_A12	AAA	AA00	36	0.37	AA00
188	2evy-m17_A_U11_A12	AAA	AA00	32	0.38	AA00
189	2evy-m18_A_U11_A12	AAA	AA00	34	0.38	AA00
190	2evy-m1_A_U11_A12	AAA	AA00	35	0.37	AA00
191	2evy-m2_A_U11_A12	AAA	AA00	35	0.37	AA00
192	2evy-m3_A_U11_A12	AAA	AA00	35	0.37	AA00
193	2evy-m4_A_U11_A12	AAA	AA00	34	0.38	AA00
194	2evy-m5_A_U11_A12	AAA	AA00	34	0.37	AA00
195	2evy-m6_A_U11_A12	AAA	AA00	35	0.37	AA00
196	2evy-m7_A_U11_A12	AAA	AA00	35	0.37	AA00
197	2evy-m8_A_U11_A12	AAA	AA00	35	0.37	AA00
198	2evy-m9_A_U11_A12	AAA	AA00	35	0.37	AA00
199	2evy-m10_A_A12_C13	AAA	AA00	53	0.27	AA00
200	2evy-m11_A_A12_C13	AAA	AA00	51	0.28	AA00
201	2evy-m12_A_A12_C13	AAA	AA00	53	0.27	AA00
202	2evy-m13_A_A12_C13	AAA	AA00	54	0.27	AA00
203	2evy-m14_A_A12_C13	AAA	AA00	54	0.27	AA00
204	2evy-m15_A_A12_C13	AAA	AA00	55	0.26	AA00
205	2evy-m16_A_A12_C13	AAA	AA00	55	0.27	AA00
206	2evy-m17_A_A12_C13	AAA	AA00	53	0.27	AA00
207	2evy-m18_A_A12_C13	AAA	AA00	52	0.27	AA00
208	2evy-m1_A_A12_C13	AAA	AA00	52	0.27	AA00
209	2evy-m2_A_A12_C13	AAA	AA00	52	0.26	AA00
210	2evy-m3_A_A12_C13	AAA	AA00	49	0.28	AA00
211	2evy-m4_A_A12_C13	AAA	AA00	54	0.27	AA00
212	2evy-m5_A_A12_C13	AAA	AA00	52	0.28	AA00
213	2evy-m6_A_A12_C13	AAA	AA00	51	0.28	AA00
214	2evy-m7_A_A12_C13	AAA	AA00	51	0.27	AA00
215	2evy-m8_A_A12_C13	AAA	AA00	52	0.28	AA00
216	2evy-m9_A_A12_C13	AAA	AA00	54	0.27	AA00
217	2evy-m10_A_C13_C14	AAA	AA00	25	0.38	AA00
218	2evy-m11_A_C13_C14	AAA	AA00	26	0.37	AA00
219	2evy-m12_A_C13_C14	AAA	AA00	20	0.40	AA00
220	2evy-m13_A_C13_C14	AAA	AA00	23	0.39	AA00
221	2evy-m14_A_C13_C14	AAA	AA00	24	0.39	AA00
222	2evy-m15_A_C13_C14	AAA	AA00	17	0.42	AA00
223	2evy-m16_A_C13_C14	AAA	AA00	27	0.38	AA00
224	2evy-m17_A_C13_C14	AAA	AA00	19	0.41	AA00
225	2evy-m18_A_C13_C14	AAA	AA00	21	0.40	AA00
226	2evy-m1_A_C13_C14	AAA	AA00	20	0.40	AA00
227	2evy-m2_A_C13_C14	AAA	AA00	19	0.40	AA00
228	2evy-m3_A_C13_C14	AAA	AA00	23	0.39	AA00
229	2evy-m4_A_C13_C14	AAA	AA00	24	0.38	AA00
230	2evy-m5_A_C13_C14	AAA	AA00	25	0.37	AA00
231	2evy-m6_A_C13_C14	AAA	AA00	24	0.38	AA00
232	2evy-m7_A_C13_C14	AAA	AA00	18	0.41	AA00
233	2evy-m8_A_C13_C14	AAA	AA00	23	0.39	AA00
234	2evy-m9_A_C13_C14	AAA	AA00	26	0.38	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 234 detected steps in 18 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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