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Conformers: ABBIImiBZICOPNSYNN
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Complex Between Neamine and the 16S-RRNA A-Site

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012et8_A_G2_C3AAwAA01670.30 AA01
022et8_A_C3_G4AAAAA03670.36 AA03
032et8_A_G4_U5NANNANT01.62 OP03
042et8_A_U5_C6NANNANT01.01 OP06
052et8_A_C6_A7AAAAA00850.28 AA00
062et8_A_A7_C8AAAAA00670.22 AA00
072et8_A_C8_A9AAAAA00820.10 AA00
082et8_A_A9_C10AAAAA08830.23 AA08
092et8_A_C10_C11AAAAA00190.30 AA00
102et8_A_C11_G12AAAAA00780.20 AA00
112et8_A_G12_G13AAAAA00890.15 AA00
122et8_A_G13_U14AAAAA00870.19 AA00
132et8_A_U14_G15AAAAA00590.26 AA00
142et8_A_G15_A16NANNANT01.19 OP29
152et8_A_A16_A17NANNANT02.25 ZZ02
162et8_A_A17_G18NANNANT00.39 AAS1
172et8_A_G18_U19AAAAA03360.45 AA03
182et8_A_U19_C20AAAAA08730.31 AA08
192et8_A_C20_G21AAAAA00600.22 AA00
202et8_A_G21_C22AAAAA00650.26 AA00
212et8_B_G25_C26AAAAA00700.19 AA00
222et8_B_C26_G27AAAAA00840.24 AA00
232et8_B_G27_U28AAwAA01420.28 AA01
242et8_B_U28_C29AAwAA11840.30 AA11
252et8_B_C29_A30AAAAA08380.31 AA08
262et8_B_A30_C31AAAAA00820.15 AA00
272et8_B_C31_A32AAAAA00750.21 AA00
282et8_B_A32_C33AAAAA00680.21 AA00
292et8_B_C33_C34AAAAA00640.20 AA00
302et8_B_C34_G35AAAAA00800.20 AA00
312et8_B_G35_G36AAAAA08830.22 AA08
322et8_B_G36_U37AAAAA00840.18 AA00
332et8_B_U37_G38AAAAA00870.23 AA00
342et8_B_G38_A39NANNANT01.40 OP29
352et8_B_A39_A40AAAAA09890.17 AA09
362et8_B_A40_G41NANNANT00.81 OP11
372et8_B_G41_U42AAAAA00370.23 AA00
382et8_B_U42_C43AAAAA00850.17 AA00
392et8_B_C43_G44AAAAA00910.19 AA00
402et8_B_G44_C45AAAAA00750.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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