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Conformers: ABBIImiBZICOPNSYNN
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Complex Between Ribostamycin and the 16S-RRNA A-Site

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012et5_A_G2_C3AAAAA00840.16 AA00
022et5_A_C3_G4AAAAA00920.12 AA00
032et5_A_G4_U5AAwAA01770.34 AA01
042et5_A_U5_C6AAAAA08230.57 AA08
052et5_A_C6_A7AAAAA00870.23 AA00
062et5_A_A7_C8AAAAA00920.15 AA00
072et5_A_C8_A9AAAAA00830.15 AA00
082et5_A_A9_C10AAAAA00820.21 AA00
092et5_A_C10_C11AAAAA00840.19 AA00
102et5_A_C11_G12AAAAA00930.12 AA00
112et5_A_G12_G13AAwAA01940.12 AA01
122et5_A_G13_U14AAAAA08920.11 AA08
132et5_A_U14_G15AAAAA00910.15 AA00
142et5_A_G15_A16NANNANT01.57 OP17
152et5_A_A16_A17AAAAA00580.24 AA00
162et5_A_A17_G18NANNANT00.80 OP30
172et5_A_G18_U19AAAAA00550.27 AA00
182et5_A_U19_C20AAAAA00840.17 AA00
192et5_A_C20_G21AAAAA00910.16 AA00
202et5_A_G21_C22AAAAA00740.32 AA00
212et5_B_G25_C26AAAAA00800.21 AA00
222et5_B_C26_G27AAAAA00800.15 AA00
232et5_B_G27_U28AAwAA01730.40 AA01
242et5_B_U28_C29AAAAA08260.56 AA08
252et5_B_C29_A30AAAAA00870.20 AA00
262et5_B_A30_C31AAAAA00910.16 AA00
272et5_B_C31_A32AAAAA00980.12 AA00
282et5_B_A32_C33AAAAA00900.14 AA00
292et5_B_C33_C34AAAAA00960.11 AA00
302et5_B_C34_G35AAAAA00960.10 AA00
312et5_B_G35_G36AAwAA01910.13 AA01
322et5_B_G36_U37AAAAA00730.20 AA00
332et5_B_U37_G38AAAAA00830.18 AA00
342et5_B_G38_A39NANNANT01.85 OP17
352et5_B_A39_A40AAAAA02780.17 AA02
362et5_B_A40_G41NANNANT00.79 OP11
372et5_B_G41_U42AAAAA00450.28 AA00
382et5_B_U42_C43AAAAA00860.17 AA00
392et5_B_C43_G44AAAAA00960.13 AA00
402et5_B_G44_C45AAAAA00960.14 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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