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Conformers: ABBIImiBZICOPNSYNN
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Complex between Lividomycin A and the 16S-Rrna A Site

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012esj_A_G2_C3AAwAA01520.25 AA01
022esj_A_C3_G4AAAAA00380.32 AA00
032esj_A_G4_U5AAwAA01590.37 AA01
042esj_A_U5_C6AAAAA08550.49 AA08
052esj_A_C6_A7AAAAA00630.24 AA00
062esj_A_A7_C8AAAAA00780.25 AA00
072esj_A_C8_A9AAAAA00910.15 AA00
082esj_A_A9_C10AAAAA08830.30 AA08
092esj_A_C10_C11AAAAA00880.14 AA00
102esj_A_C11_G12AAAAA00880.20 AA00
112esj_A_G12_G13AAAAA00930.12 AA00
122esj_A_G13_U14AAAAA00850.17 AA00
132esj_A_U14_G15AAAAA00800.22 AA00
142esj_A_G15_A16NANNANT01.64 OP17
152esj_A_A16_A17AAAAA00270.37 AA00
162esj_A_A17_G18NANNANT01.44 OP16
172esj_A_G18_U19AAAAA00610.29 AA00
182esj_A_U19_C20AAAAA00850.14 AA00
192esj_A_C20_G21AAAAA00750.12 AA00
202esj_A_G21_C22AAAAA00830.16 AA00
212esj_B_G25_C26AAAAA00820.17 AA00
222esj_B_C26_G27AAAAA00630.22 AA00
232esj_B_G27_U28AAwAA01280.38 AA01
242esj_B_U28_C29AAwAA01360.41 AA01
252esj_B_C29_A30AAAAA08910.23 AA08
262esj_B_A30_C31AAAAA00820.21 AA00
272esj_B_C31_A32AAAAA00920.15 AA00
282esj_B_A32_C33AAAAA00870.09 AA00
292esj_B_C33_C34AAAAA00830.18 AA00
302esj_B_C34_G35AAwAA01950.15 AA01
312esj_B_G35_G36AAAAA08810.23 AA08
322esj_B_G36_U37AAAAA00760.22 AA00
332esj_B_U37_G38AAAAA00750.20 AA00
342esj_B_G38_A39NANNANT01.10 IC07
352esj_B_A39_A40NANNANT00.47 AB03
362esj_B_A40_G41NANNANT00.52 OP12
372esj_B_G41_U42AAAAA00510.25 AA00
382esj_B_U42_C43AAAAA00940.11 AA00
392esj_B_C43_G44AAAAA00930.18 AA00
402esj_B_G44_C45AAAAA00670.25 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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