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Conformers: ABBIImiBZICOPNSYNN
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Complex between Kanamycin A and the 16S-Rrna A Site.

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012esi_A_U0_U1AAuAA07260.40 AA07
022esi_A_G2_C3AAAAA08750.19 AA08
032esi_A_C3_G4AAAAA00840.20 AA00
042esi_A_G4_U5AAwAA01490.47 AA01
052esi_A_U5_C6AAAAA00250.49 AA00
062esi_A_C6_A7AAAAA00730.24 AA00
072esi_A_A7_C8AAAAA00900.16 AA00
082esi_A_C8_A9AAAAA08660.35 AA08
092esi_A_A9_C10AAAAA00740.23 AA00
102esi_A_C10_C11AAAAA00340.30 AA00
112esi_A_C11_G12AAAAA00860.21 AA00
122esi_A_G12_G13AAAAA00920.12 AA00
132esi_A_G13_U14AAAAA00790.25 AA00
142esi_A_U14_G15AAAAA00930.13 AA00
152esi_A_G15_A16NANNANT01.91 OP17
162esi_A_A16_A17AAAAA04390.26 AA04
172esi_A_A17_G18NANNANT00.81 OP11
182esi_A_G18_U19AAAAA00650.27 AA00
192esi_A_U19_C20AAAAA00920.18 AA00
202esi_A_C20_G21AAAAA00670.22 AA00
212esi_A_G21_C22AAAAA00570.24 AA00
222esi_B_G25_C26AAAAA00400.33 AA00
232esi_B_C26_G27AAAAA00850.24 AA00
242esi_B_G27_U28NANNANT00.90 AA11
252esi_B_U28_C29AAwAA05560.38 AA05
262esi_B_C29_A30AAAAA08800.25 AA08
272esi_B_A30_C31AAAAA08750.17 AA08
282esi_B_C31_A32AAAAA00640.24 AA00
292esi_B_A32_C33AAAAA00870.20 AA00
302esi_B_C33_C34AAAAA00960.16 AA00
312esi_B_C34_G35AAAAA00910.16 AA00
322esi_B_G35_G36AAAAA04840.18 AA04
332esi_B_G36_U37AAAAA00690.23 AA00
342esi_B_U37_G38AAAAA00820.23 AA00
352esi_B_G38_A39NANNANT01.41 OP29
362esi_B_A39_A40AAAAA09770.16 AA09
372esi_B_A40_G41NANNANT00.93 OP11
382esi_B_G41_U42AAAAA00410.32 AA00
392esi_B_U42_C43AAAAA00570.17 AA00
402esi_B_C43_G44AAAAA00510.20 AA00
412esi_B_G44_C45AAAAA00800.10 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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