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Conformers: ABBIImiBZICOPNSYNN
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Guanine Riboswitch U47C mutant bound to hypoxanthine

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012eew_A_G15_G16NANNANT00.42 AA10
022eew_A_G16_A17AAAAA00170.36 AA00
032eew_A_A17_C18AAwAA01810.16 AA01
042eew_A_C18_A19AAAAA08640.21 AA08
052eew_A_A19_U20AAAAA00940.12 AA00
062eew_A_U20_A21AAAAA00360.32 AA00
072eew_A_A21_U22NANNANT00.72 OP04
082eew_A_U22_A23NANNANT00.64 ZZ1S
092eew_A_A23_A24NANNANT00.95 OP29
102eew_A_A24_U25OPNOP01870.17 OP01
112eew_A_U25_C26AAAAA00830.16 AA00
122eew_A_C26_G27AAAAA03700.23 AA03
132eew_A_G27_C28AAwAA01730.24 AA01
142eew_A_C28_G29AAAAA00860.14 AA00
152eew_A_G29_U30AAAAA00720.19 AA00
162eew_A_U30_G31AAAAA00550.20 AA00
172eew_A_G31_G32AAAAA00680.26 AA00
182eew_A_G32_A33AAAAA00420.26 AA00
192eew_A_A33_U34A-BAB05730.20 AB05
202eew_A_U34_A35NANNANT00.98 OP22
212eew_A_A35_U36NANNANT00.46 OP21
222eew_A_U36_G37OPNOP11810.41 OP11
232eew_A_G37_G38AAAAA00800.19 AA00
242eew_A_G38_C39NANNANT00.40 OP01
252eew_A_C39_A40AAAAA00500.27 AA00
262eew_A_A40_C41AAAAA00900.12 AA00
272eew_A_C41_G42AAAAA00860.16 AA00
282eew_A_G42_C43AAAAA00810.24 AA00
292eew_A_C43_A44AAAAA00880.18 AA00
302eew_A_A44_A45AAwAA01860.24 AA01
312eew_A_A45_G46AAAAA08500.38 AA08
322eew_A_G46_C47A-BAB04690.34 AB04
332eew_A_C47_U48NANNANT00.80 OP17
342eew_A_U48_U49NANNANT00.59 OP20
352eew_A_U49_C50OPNOP15290.71 OP15
362eew_A_C50_U51AAAAA04660.41 AA04
372eew_A_U51_A52AAAAA00770.28 AA00
382eew_A_A52_C53AAAAA00600.28 AA00
392eew_A_C53_C54OPNOP01180.61 OP01
402eew_A_C54_G55AAAAA00480.32 AA00
412eew_A_G55_G56AAAAA00920.15 AA00
422eew_A_G56_G57AAAAA00880.17 AA00
432eew_A_G57_C58AAAAA04880.24 AA04
442eew_A_C58_A59AAAAA08730.20 AA08
452eew_A_A59_C60AAAAA08540.31 AA08
462eew_A_C60_C61AAAAA00860.16 AA00
472eew_A_C61_G62NANNANT00.61 IC04
482eew_A_G62_U63NANNANT01.38 BB10
492eew_A_U63_A64NANNANT01.67 BB14
502eew_A_A64_A65NANNANT00.36 AB01
512eew_A_A65_A66B-ABA16430.31 BA16
522eew_A_A66_U67NANNANT00.69 AA10
532eew_A_U67_G68AAAAA08830.16 AA08
542eew_A_G68_U69AAAAA08850.15 AA08
552eew_A_U69_C70AAAAA08770.26 AA08
562eew_A_C70_C71AAAAA00490.24 AA00
572eew_A_C71_G72AAAAA00360.23 AA00
582eew_A_G72_A73NANNANT00.49 IC04
592eew_A_A73_C74AAAAA00720.24 AA00
602eew_A_C74_U75AAAAA00490.20 AA00
612eew_A_U75_A76AAAAA00520.14 AA00
622eew_A_A76_U77AAAAA00890.13 AA00
632eew_A_U77_G78AAAAA04890.10 AA04
642eew_A_G78_U79AAAAA00620.20 AA00
652eew_A_U79_C80AAwAA01450.16 AA01
662eew_A_C80_C81AAAAA00530.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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