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Conformers: ABBIImiBZICOPNSYNN
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Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012eet_A_G15_G16NANNANT00.76 AB02
022eet_A_G16_A17AAAAA00710.17 AA00
032eet_A_A17_C18AAwAA10680.19 AA10
042eet_A_C18_A19AAAAA03480.28 AA03
052eet_A_A19_U20AAAAA03330.22 AA03
062eet_A_U20_G21NANNANT00.57 AB02
072eet_A_G21_U22NANNANT00.73 OP04
082eet_A_U22_A23NANNANT00.69 ZZ1S
092eet_A_A23_A24NANNANT01.01 OP29
102eet_A_A24_U25OPNOP01850.24 OP01
112eet_A_U25_C26AAAAA00550.29 AA00
122eet_A_C26_G27AAAAA00770.27 AA00
132eet_A_G27_C28AAwAA01910.22 AA01
142eet_A_C28_G29AAAAA00800.16 AA00
152eet_A_G29_U30AAAAA00710.20 AA00
162eet_A_U30_G31AAAAA00800.15 AA00
172eet_A_G31_G32AAAAA00620.27 AA00
182eet_A_G32_A33AAAAA00650.26 AA00
192eet_A_A33_U34A-BAB05720.20 AB05
202eet_A_U34_A35NANNANT01.02 OP22
212eet_A_A35_U36NANNANT00.44 OP21
222eet_A_U36_G37OPNOP11840.40 OP11
232eet_A_G37_G38AAAAA00660.20 AA00
242eet_A_G38_C39OPNOP01450.32 OP01
252eet_A_C39_A40AAAAA00370.31 AA00
262eet_A_A40_C41AAAAA00940.10 AA00
272eet_A_C41_G42AAAAA00850.17 AA00
282eet_A_G42_C43AAAAA00790.27 AA00
292eet_A_C43_A44AAAAA00880.21 AA00
302eet_A_A44_A45NANNANT00.34 AA06
312eet_A_A45_G46AAAAA00350.44 AA00
322eet_A_G46_U47A-BAB04540.37 AB04
332eet_A_U47_U48NANNANT00.77 OP17
342eet_A_U48_U49OPNOP20310.62 OP20
352eet_A_U49_C50OPNOP15320.70 OP15
362eet_A_C50_U51AAAAA08450.41 AA08
372eet_A_U51_A52AAAAA00710.26 AA00
382eet_A_A52_C53AAAAA08500.28 AA08
392eet_A_C53_C54NANNANT00.63 OP01
402eet_A_C54_G55AAAAA00480.30 AA00
412eet_A_G55_G56AAAAA00880.14 AA00
422eet_A_G56_G57AAAAA00930.12 AA00
432eet_A_G57_C58AAAAA00740.23 AA00
442eet_A_C58_A59AAAAA00820.23 AA00
452eet_A_A59_C60AAAAA00520.34 AA00
462eet_A_C60_C61AAAAA00830.16 AA00
472eet_A_C61_G62NANNANT00.62 IC04
482eet_A_G62_U63NANNANT00.60 OP15
492eet_A_U63_A64NANNANT01.70 BB14
502eet_A_A64_A65NANNANT00.42 AB01
512eet_A_A65_A66B-ABA16530.28 BA16
522eet_A_A66_U67NANNANT00.69 AA10
532eet_A_U67_G68AAAAA00760.17 AA00
542eet_A_G68_U69AAAAA00860.18 AA00
552eet_A_U69_C70AAAAA00750.18 AA00
562eet_A_C70_C71AAAAA08790.19 AA08
572eet_A_C71_G72AAAAA00950.19 AA00
582eet_A_G72_A73NANNANT00.48 IC04
592eet_A_A73_C74AAAAA00750.29 AA00
602eet_A_C74_C75AAAAA00850.17 AA00
612eet_A_C75_A76AAAAA00750.18 AA00
622eet_A_A76_U77AAAAA00870.15 AA00
632eet_A_U77_G78AAAAA00900.17 AA00
642eet_A_G78_U79AAAAA00890.20 AA00
652eet_A_U79_C80AAwAA01480.31 AA01
662eet_A_C80_C81AAAAA0090.69 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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