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Conformers: ABBIImiBZICOPNSYNN
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RNA-dependent RNA polymerase of foot-and-mouth disease virus in complex with a template-primer RNA and ATP

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ec0_B_A903_U904NANNANT00.78 AB02
022ec0_B_U904_G905NANNANT00.56 AA04
032ec0_B_G905_G906AAAAA08400.28 AA08
042ec0_B_G906_G907AAAAA08840.20 AA08
052ec0_B_G907_C908AAAAA08820.23 AA08
062ec0_B_C908_C909AAAAA00850.21 AA00
072ec0_B_C909_C910NANNANT00.31 AB05
082ec0_C_G915_G916AAAAA00650.27 AA00
092ec0_C_G916_G917AAAAA00270.26 AA00
102ec0_C_G917_C918AAAAA00900.14 AA00
112ec0_C_C918_C919AAAAA00810.16 AA00
122ec0_C_C919_C920AAAAA00940.12 AA00
132ec0_C_C920_A921AAAAA00490.22 AA00
142ec0_E_A903_U904NANNANT00.78 AB02
152ec0_E_U904_G905NANNANT00.56 AA04
162ec0_E_G905_G906AAAAA08110.32 AA08
172ec0_E_G906_G907AAAAA00710.20 AA00
182ec0_E_G907_C908AAAAA08820.25 AA08
192ec0_E_C908_C909AAAAA00560.22 AA00
202ec0_E_C909_C910AAAAA00230.40 AA00
212ec0_F_G915_G916AAAAA08570.26 AA08
222ec0_F_G916_G917AAAAA00280.26 AA00
232ec0_F_G917_C918AAAAA00840.18 AA00
242ec0_F_C918_C919AAAAA00890.14 AA00
252ec0_F_C919_C920AAAAA00830.13 AA00
262ec0_F_C920_A921AAAAA00600.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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