DNATCO v4.1: results

2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2dxi_C_G501_G502	AAA	AA00	51	0.27	AA00
002	2dxi_C_G502_C503	AAA	AA00	89	0.17	AA00
003	2dxi_C_C503_C504	AAA	AA00	96	0.14	AA00
004	2dxi_C_C504_C505	AAA	AA00	86	0.11	AA00
005	2dxi_C_C505_C506	AAA	AA00	92	0.19	AA00
006	2dxi_C_C506_A507	A-B	AB04	49	0.34	AB04
007	2dxi_C_A507_U508	NAN	NANT	0	1.60	OP16
008	2dxi_C_U508_C509	NAN	NANT	0	0.46	IC07
009	2dxi_C_C509_G510	NAN	NANT	0	1.32	OP12
010	2dxi_C_G510_U511	AAA	AA00	59	0.23	AA00
011	2dxi_C_U511_C512	AAA	AA00	63	0.23	AA00
012	2dxi_C_C512_U513	AAw	AA01	92	0.24	AA01
013	2dxi_C_U513_A514	AAu	AA12	72	0.38	AA12
014	2dxi_C_A514_G515	A-B	AB01	18	0.64	AB01
015	2dxi_C_G515_C516	NAN	NANT	0	1.30	IC04
016	2dxi_C_C516_G518	NAN	NANT	0	1.43	OP21
017	2dxi_C_G518_G519	NAN	NANT	0	1.07	AB02
018	2dxi_C_G519_U520	NAN	NANT	0	1.44	OP01
019	2dxi_C_U520.A_A521	NAN	NANT	0	0.69	OP29
020	2dxi_C_U520_U520.A	NAN	NANT	0	0.45	OP04
021	2dxi_C_A521_G522	AAu	AA07	70	0.35	AA07
022	2dxi_C_G522_G523	AAA	AA00	63	0.18	AA00
023	2dxi_C_G523_A524	AAA	AA00	93	0.09	AA00
024	2dxi_C_A524_C525	AAA	AA00	84	0.18	AA00
025	2dxi_C_C525_G526	AAA	AA00	51	0.40	AA00
026	2dxi_C_G526_C527	AAA	AA00	93	0.21	AA00
027	2dxi_C_C527_G528	AAA	AA00	83	0.17	AA00
028	2dxi_C_G528_G529	AAA	AA00	88	0.11	AA00
029	2dxi_C_G529_C530	AAA	AA00	91	0.12	AA00
030	2dxi_C_C530_C531	AAA	AA00	97	0.14	AA00
031	2dxi_C_C531_C532	AAA	AA08	78	0.27	AA08
032	2dxi_C_C532_U533	AAA	AA08	71	0.39	AA08
033	2dxi_C_U533_C534	NAN	NANT	0	0.56	OP04
034	2dxi_C_C534_U535	AAu	AA12	78	0.23	AA12
035	2dxi_C_U535_C536	AAA	AA08	92	0.20	AA08
036	2dxi_C_C536_A537	AAw	AA01	77	0.18	AA01
037	2dxi_C_A537_A538	AAA	AA00	41	0.41	AA00
038	2dxi_C_A538_G539	AAA	AA00	73	0.34	AA00
039	2dxi_C_G539_G540	AAA	AA00	91	0.10	AA00
040	2dxi_C_G540_C541	AAA	AA00	96	0.13	AA00
041	2dxi_C_C541_C542	AAA	AA00	98	0.14	AA00
042	2dxi_C_C542_G543	AAA	AA00	91	0.22	AA00
043	2dxi_C_G543_A544	AAA	AA00	94	0.16	AA00
044	2dxi_C_A544_A545	AAA	AA00	71	0.33	AA00
045	2dxi_C_A545_A546	NAN	NANT	0	0.84	AA07
046	2dxi_C_A546_C548	NAN	NANT	0	0.89	BB13
047	2dxi_C_C548_G549	NAN	NANT	0	1.03	OP05
048	2dxi_C_G549_G550	AAA	AA00	46	0.27	AA00
049	2dxi_C_G550_G551	AAA	AA00	74	0.22	AA00
050	2dxi_C_G551_G552	AAw	AA01	64	0.25	AA01
051	2dxi_C_G552_G553	NAN	NANT	0	0.56	AA10
052	2dxi_C_G553_U554	AAA	AA00	12	0.47	AA00
053	2dxi_C_U554_U555	AAA	AA08	83	0.35	AA08
054	2dxi_C_U555_C556	OPN	OP04	77	0.23	OP04
055	2dxi_C_C556_G557	AAA	AA00	22	0.43	AA00
056	2dxi_C_G557_A558	NAN	NANT	0	0.99	AA11
057	2dxi_C_A558_U559	NAN	NANT	0	1.31	OP05
058	2dxi_C_U559_U560	NAN	NANT	0	0.51	AA01
059	2dxi_C_U560_C561	OPN	OP12	57	0.35	OP12
060	2dxi_C_C561_C562	AAA	AA00	61	0.24	AA00
061	2dxi_C_C562_C563	AAA	AA00	64	0.18	AA00
062	2dxi_C_C563_C564	AAA	AA00	86	0.14	AA00
063	2dxi_C_C564_C565	AAA	AA00	88	0.18	AA00
064	2dxi_C_C565_U566	AAA	AA00	85	0.23	AA00
065	2dxi_C_U566_G567	AAA	AA00	90	0.18	AA00
066	2dxi_C_G567_G568	AAA	AA00	85	0.10	AA00
067	2dxi_C_G568_G569	AAA	AA00	83	0.20	AA00
068	2dxi_C_G569_G570	AAA	AA00	90	0.16	AA00
069	2dxi_C_G570_U571	AAA	AA00	83	0.23	AA00
070	2dxi_C_U571_C572	AAw	AA01	39	0.39	AA01
071	2dxi_C_C572_A573	NAN	NANT	0	2.00	OP10
072	2dxi_C_A573_C574	NAN	NANT	0	1.39	OP18
073	2dxi_C_C574_C575	NAN	NANT	0	1.23	OP31
074	2dxi_C_C575_A576	AAw	AA05	39	0.58	AA05
075	2dxi_D_G501_G502	AAA	AA00	70	0.22	AA00
076	2dxi_D_G502_C503	AAA	AA00	81	0.20	AA00
077	2dxi_D_C503_C504	AAA	AA00	96	0.11	AA00
078	2dxi_D_C504_C505	AAA	AA00	89	0.12	AA00
079	2dxi_D_C505_C506	AAA	AA00	92	0.19	AA00
080	2dxi_D_C506_A507	A-B	AB04	37	0.39	AB04
081	2dxi_D_A507_U508	NAN	NANT	0	1.56	OP16
082	2dxi_D_U508_C509	NAN	NANT	0	0.49	IC07
083	2dxi_D_C509_G510	NAN	NANT	0	1.76	OP04
084	2dxi_D_G510_U511	AAA	AA00	60	0.22	AA00
085	2dxi_D_U511_C512	AAA	AA00	61	0.23	AA00
086	2dxi_D_C512_U513	AAw	AA01	89	0.24	AA01
087	2dxi_D_U513_A514	AAu	AA12	72	0.37	AA12
088	2dxi_D_A514_G515	A-B	AB01	18	0.66	AB01
089	2dxi_D_G515_C516	NAN	NANT	0	1.30	IC04
090	2dxi_D_C516_G518	NAN	NANT	0	1.42	OP21
091	2dxi_D_G518_G519	NAN	NANT	0	1.06	AB02
092	2dxi_D_G519_U520	NAN	NANT	0	1.43	OP01
093	2dxi_D_U520.A_A521	NAN	NANT	0	0.65	OP29
094	2dxi_D_U520_U520.A	NAN	NANT	0	0.45	OP04
095	2dxi_D_A521_G522	AAu	AA07	72	0.35	AA07
096	2dxi_D_G522_G523	AAA	AA00	78	0.17	AA00
097	2dxi_D_G523_A524	AAA	AA00	91	0.10	AA00
098	2dxi_D_A524_C525	AAA	AA00	84	0.17	AA00
099	2dxi_D_C525_G526	AAA	AA00	58	0.37	AA00
100	2dxi_D_G526_C527	AAA	AA00	90	0.21	AA00
101	2dxi_D_C527_G528	AAA	AA00	83	0.18	AA00
102	2dxi_D_G528_G529	AAA	AA00	87	0.12	AA00
103	2dxi_D_G529_C530	AAA	AA00	90	0.13	AA00
104	2dxi_D_C530_C531	AAA	AA00	98	0.14	AA00
105	2dxi_D_C531_C532	AAA	AA08	79	0.28	AA08
106	2dxi_D_C532_U533	AAA	AA08	66	0.42	AA08
107	2dxi_D_U533_C534	NAN	NANT	0	0.56	OP04
108	2dxi_D_C534_U535	AAu	AA12	84	0.20	AA12
109	2dxi_D_U535_C536	AAA	AA08	85	0.21	AA08
110	2dxi_D_C536_A537	AAw	AA01	84	0.16	AA01
111	2dxi_D_A537_A538	AAA	AA00	50	0.41	AA00
112	2dxi_D_A538_G539	AAA	AA00	70	0.35	AA00
113	2dxi_D_G539_G540	AAA	AA00	83	0.10	AA00
114	2dxi_D_G540_C541	AAA	AA00	95	0.14	AA00
115	2dxi_D_C541_C542	AAA	AA00	94	0.16	AA00
116	2dxi_D_C542_G543	AAA	AA00	89	0.22	AA00
117	2dxi_D_G543_A544	AAA	AA00	95	0.16	AA00
118	2dxi_D_A544_A545	AAA	AA00	64	0.35	AA00
119	2dxi_D_A545_A546	NAN	NANT	0	0.85	AA07
120	2dxi_D_A546_C548	NAN	NANT	0	1.33	OP08
121	2dxi_D_C548_G549	NAN	NANT	0	1.03	OP05
122	2dxi_D_G549_G550	AAA	AA00	33	0.29	AA00
123	2dxi_D_G550_G551	AAA	AA00	74	0.22	AA00
124	2dxi_D_G551_G552	AAw	AA01	67	0.24	AA01
125	2dxi_D_G552_G553	NAN	NANT	0	0.62	AA10
126	2dxi_D_G553_U554	AAA	AA00	11	0.48	AA00
127	2dxi_D_U554_U555	AAA	AA08	84	0.35	AA08
128	2dxi_D_U555_C556	OPN	OP04	79	0.23	OP04
129	2dxi_D_C556_G557	AAA	AA00	22	0.43	AA00
130	2dxi_D_G557_A558	NAN	NANT	0	0.99	AA11
131	2dxi_D_A558_U559	NAN	NANT	0	1.31	OP05
132	2dxi_D_U559_U560	NAN	NANT	0	0.47	AA01
133	2dxi_D_U560_C561	OPN	OP12	56	0.35	OP12
134	2dxi_D_C561_C562	AAA	AA00	63	0.24	AA00
135	2dxi_D_C562_C563	AAA	AA00	72	0.17	AA00
136	2dxi_D_C563_C564	AAA	AA00	78	0.15	AA00
137	2dxi_D_C564_C565	AAA	AA00	87	0.29	AA00
138	2dxi_D_C565_U566	AAA	AA00	86	0.21	AA00
139	2dxi_D_U566_G567	AAA	AA00	89	0.18	AA00
140	2dxi_D_G567_G568	AAA	AA00	89	0.10	AA00
141	2dxi_D_G568_G569	AAA	AA00	83	0.20	AA00
142	2dxi_D_G569_G570	AAA	AA00	92	0.18	AA00
143	2dxi_D_G570_U571	AAA	AA00	82	0.24	AA00
144	2dxi_D_U571_C572	AAw	AA01	35	0.34	AA01
145	2dxi_D_C572_A573	NAN	NANT	0	1.99	OP10
146	2dxi_D_A573_C574	NAN	NANT	0	1.38	OP18
147	2dxi_D_C574_C575	NAN	NANT	0	1.36	OP31
148	2dxi_D_C575_A576	AAw	AA05	58	0.45	AA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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