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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012du4_C_G901_C902NANNANT00.64 AA04
022du4_C_C902_C903NANNANT00.42 AA12
032du4_C_C903_A904AAAAA00480.35 AA00
042du4_C_A904_G905AAAAA00490.34 AA00
052du4_C_G905_G906NANNANT00.51 AA10
062du4_C_G906_G907NANNANT00.49 AA06
072du4_C_G907_U908NANNANT01.29 OP30
082du4_C_U908_G909NANNANT01.12 AA11
092du4_C_G909_G910NANNANT01.69 OP14
102du4_C_G910_C911AAAAA00430.27 AA00
112du4_C_C911_A912AAAAA00610.28 AA00
122du4_C_A912_G913AAAAA08350.34 AA08
132du4_C_G913_A914NANNANT00.72 AA11
142du4_C_A914_G915AAAAA08230.70 AA08
152du4_C_G915_G916AAAAA09840.25 AA09
162du4_C_G916_G917NANNANT01.52 AA13
172du4_C_G917_G918NANNANT01.19 AB02
182du4_C_G918_C919NANNANT01.98 OP15
192du4_C_C919_U920AAwAA01260.42 AA01
202du4_C_U920_U921NANNANT01.26 OP08
212du4_C_U921_U922NANNANT00.87 AA00
222du4_C_U922_G923AAAAA00480.23 AA00
232du4_C_G923_C924AAAAA00820.19 AA00
242du4_C_C924_G925AAAAA00150.49 AA00
252du4_C_G925_G926AAAAA08720.32 AA08
262du4_C_G926_C927AAAAA08830.26 AA08
272du4_C_C927_G928AAAAA00730.22 AA00
282du4_C_G928_G929AAAAA00760.30 AA00
292du4_C_G929_A930AAAAA00240.27 AA00
302du4_C_A930_C931AAAAA00440.19 AA00
312du4_C_C931_U932NANNANT01.63 OP17
322du4_C_U932_G933NANNANT02.08 OP24
332du4_C_G933_C934NANNANT00.58 IC02
342du4_C_C934_A935NANNANT01.69 OP11
352du4_C_A935_G936NANNANT00.46 AA06
362du4_C_G936_A937NANNANT01.89 IC04
372du4_C_A937_U938AAAAA08570.25 AA08
382du4_C_U938_C939AAAAA00640.20 AA00
392du4_C_C939_C940AAAAA00530.30 AA00
402du4_C_C940_G941AAAAA00430.15 AA00
412du4_C_G941_C942NANNANT00.87 AA12
422du4_C_C942_U943NANNANT01.28 AA12
432du4_C_U943_U944NANNANT01.27 AA07
442du4_C_U944_U945NANNANT01.44 OP03
452du4_C_U945_A946NANNANT01.13 OP04
462du4_C_A946_C947AAAAA08570.28 AA08
472du4_C_C947_C948NANNANT00.67 OP06
482du4_C_C948_C949AAAAA00310.34 AA00
492du4_C_C949_C950AAAAA00880.18 AA00
502du4_C_C950_G951AAwAA06900.18 AA06
512du4_C_G951_G952AAAAA08800.21 AA08
522du4_C_G952_U953AAAAA00650.26 AA00
532du4_C_U953_U954AAAAA08790.19 AA08
542du4_C_U954_C955OPNOP04210.21 OP04
552du4_C_C955_G956AAAAA00840.33 AA00
562du4_C_G956_A957NANNANT00.43 IC01
572du4_C_A957_A958NANNANT01.74 OP05
582du4_C_A958_U959AAwAA05160.56 AA05
592du4_C_U959_C960NANNANT00.41 OP12
602du4_C_C960_C961AAAAA00910.16 AA00
612du4_C_C961_G962AAAAA00770.20 AA00
622du4_C_G962_G963AAAAA08700.35 AA08
632du4_C_G963_G964AAAAA00860.21 AA00
642du4_C_G964_C965AAwAA01450.28 AA01
652du4_C_C965_C966AAAAA04670.48 AA04
662du4_C_C966_C967AAuAA12380.49 AA12
672du4_C_C967_U968NANNANT00.71 AA08
682du4_C_U968_G969NANNANT00.83 AA04
692du4_C_G969_G970NANNANT00.65 AA10
702du4_C_G970_C971AAAAA00130.44 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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