Conformers:
ABBIImiBZICOPNSYNN
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Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2dqp_A_DC1_OMU2 | AAA | AA00 | 60 | 0.30 |
| 02 | 2dqp_A_OMU2_DC3 | AAA | AA00 | 82 | 0.14 |
| 03 | 2dqp_A_DC3_DT4 | AAA | AA00 | 90 | 0.16 |
| 04 | 2dqp_A_DT4_OMU5 | AAA | AA00 | 81 | 0.23 |
| 05 | 2dqp_A_OMU5_DC6 | AAA | AA00 | 68 | 0.26 |
| 06 | 2dqp_A_DC6_DT7 | AAA | AA00 | 96 | 0.13 |
| 07 | 2dqp_A_DT7_DT8 | AAA | AA00 | 85 | 0.18 |
| 08 | 2dqp_A_DT8_DC9 | AAA | AA00 | 86 | 0.21 |
| 09 | 2dqp_B_G10_A11 | AAA | AA00 | 44 | 0.27 |
| 10 | 2dqp_B_A11_A12 | AAA | AA00 | 83 | 0.24 |
| 11 | 2dqp_B_A12_G13 | AAA | AA00 | 85 | 0.17 |
| 12 | 2dqp_B_G13_A14 | AAA | AA00 | 93 | 0.16 |
| 13 | 2dqp_B_A14_A15 | AAA | AA00 | 87 | 0.10 |
| 14 | 2dqp_B_A15_G16 | AAA | AA00 | 93 | 0.11 |
| 15 | 2dqp_B_G16_A17 | AAA | AA00 | 82 | 0.23 |
| 16 | 2dqp_B_A17_G18 | AAA | AA00 | 77 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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