DNATCO v4.1: results

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state

Results of the assignment of 146 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2deu_C_G1_U2	NAN	NANT	0	0.58	AA07
002	2deu_C_U2_C3	NAN	NANT	0	0.99	ZZ02
003	2deu_C_C3_C4	NAN	NANT	0	2.13	OP16
004	2deu_C_C4_C5	AAw	AA01	74	0.32	AA01
005	2deu_C_C5_C6	AAw	AA10	13	0.60	AA10
006	2deu_C_C6_U7	AAA	AA08	48	0.46	AA08
007	2deu_C_U7_U8	NAN	NANT	0	1.65	OP31
008	2deu_C_U8_C9	NAN	NANT	0	0.71	IC07
009	2deu_C_C9_G10	NAN	NANT	0	1.32	AA07
010	2deu_C_G10_U11	AAA	AA08	87	0.14	AA08
011	2deu_C_U11_C12	AAA	AA00	6	0.34	AA00
012	2deu_C_C12_U13	AAw	AA01	80	0.28	AA01
013	2deu_C_U13_A14	AAu	AA12	40	0.41	AA12
014	2deu_C_A14_G15	AAA	AA04	44	0.58	AA04
015	2deu_C_G15_A16	NAN	NANT	0	1.09	OP17
016	2deu_C_A16_G17	NAN	NANT	0	1.80	OP30
017	2deu_C_G17_G18	NAN	NANT	0	0.92	AA01
018	2deu_C_G18_C19	NAN	NANT	0	0.60	OP12
019	2deu_C_C19_C20	NAN	NANT	0	1.21	OP05
020	2deu_C_C20.A_A21	NAN	NANT	0	0.72	OP06
021	2deu_C_C20_C20.A	NAN	NANT	0	1.13	OP21
022	2deu_C_A21_G22	AAu	AA07	36	0.30	AA07
023	2deu_C_G22_G23	AAA	AA08	56	0.27	AA08
024	2deu_C_G23_A24	AAA	AA00	55	0.27	AA00
025	2deu_C_A24_C25	AAA	AA00	44	0.25	AA00
026	2deu_C_C25_A26	AAA	AA00	49	0.31	AA00
027	2deu_C_A26_C27	AAA	AA00	23	0.36	AA00
028	2deu_C_C27_C28	AAA	AA00	68	0.23	AA00
029	2deu_C_C28_G29	AAA	AA00	86	0.13	AA00
030	2deu_C_G29_C30	AAA	AA00	81	0.14	AA00
031	2deu_C_C30_C31	AAA	AA00	35	0.26	AA00
032	2deu_C_C31_C32	AAA	AA00	12	0.41	AA00
033	2deu_C_C32_U33	AAA	AA08	48	0.29	AA08
034	2deu_C_U33_U34	NAN	NANT	0	1.19	OP17
035	2deu_C_U34_U35	NAN	NANT	0	1.51	OP31
036	2deu_C_U35_C36	AAA	AA00	19	0.30	AA00
037	2deu_C_C36_A37	NAN	NANT	0	0.45	AA10
038	2deu_C_A37_C38	NAN	NANT	0	0.49	AB2S
039	2deu_C_C38_G39	SYN	AAS1	60	0.29	AAS1
040	2deu_C_G39_G40	AAA	AA00	48	0.26	AA00
041	2deu_C_G40_C41	AAA	AA00	41	0.22	AA00
042	2deu_C_C41_G42	AAA	AA00	56	0.23	AA00
043	2deu_C_G42_G43	AAA	AA00	71	0.20	AA00
044	2deu_C_G43_U44	AAA	AA00	44	0.28	AA00
045	2deu_C_U44_A45	AAA	AA00	17	0.46	AA00
046	2deu_C_A45_A46	NAN	NANT	0	0.69	AA13
047	2deu_C_A46_C47	NAN	NANT	0	0.84	AA10
048	2deu_C_C47_A49	NAN	NANT	0	1.54	OP06
049	2deu_C_A49_G50	AAA	AA00	73	0.19	AA00
050	2deu_C_G50_G51	AAA	AA00	33	0.24	AA00
051	2deu_C_G51_G52	AAw	AA01	46	0.30	AA01
052	2deu_C_G52_G53	AAw	AA06	67	0.30	AA06
053	2deu_C_G53_U54	AAA	AA00	39	0.34	AA00
054	2deu_C_U54_U55	AAw	AA01	22	0.40	AA01
055	2deu_C_U55_C56	OPN	OP04	19	0.46	OP04
056	2deu_C_C56_G57	AAA	AA00	76	0.35	AA00
057	2deu_C_G57_A58	NAN	NANT	0	0.92	AA03
058	2deu_C_A58_A59	NAN	NANT	0	0.42	OP03
059	2deu_C_A59_U60	AAA	AA08	72	0.43	AA08
060	2deu_C_U60_C61	NAN	NANT	0	1.65	OP01
061	2deu_C_C61_C62	AAA	AA00	62	0.26	AA00
062	2deu_C_C62_C63	AAA	AA00	82	0.20	AA00
063	2deu_C_C63_C64	AAw	AA06	94	0.17	AA06
064	2deu_C_C64_U65	NAN	NANT	0	0.80	AA06
065	2deu_C_U65_A66	NAN	NANT	0	0.80	AA06
066	2deu_C_A66_G67	NAN	NANT	0	1.30	AA06
067	2deu_C_G67_G68	NAN	NANT	0	0.56	AA01
068	2deu_C_G68_G69	NAN	NANT	0	0.52	AA10
069	2deu_C_G69_G70	NAN	NANT	0	0.38	AA06
070	2deu_C_G70_A71	NAN	NANT	0	1.07	OP06
071	2deu_C_A71_C72	NAN	NANT	0	0.99	OP30
072	2deu_C_C72_G73	NAN	NANT	0	1.91	OP04
073	2deu_C_G73_C74	NAN	NANT	0	1.73	OP17
074	2deu_D_G1_U2	NAN	NANT	0	0.58	AA07
075	2deu_D_U2_C3	NAN	NANT	0	0.99	ZZ02
076	2deu_D_C3_C4	NAN	NANT	0	2.13	OP16
077	2deu_D_C4_C5	AAw	AA01	75	0.32	AA01
078	2deu_D_C5_C6	AAw	AA10	13	0.60	AA10
079	2deu_D_C6_U7	AAA	AA08	45	0.46	AA08
080	2deu_D_U7_U8	NAN	NANT	0	1.66	OP31
081	2deu_D_U8_C9	NAN	NANT	0	0.71	IC07
082	2deu_D_C9_G10	NAN	NANT	0	1.32	AA07
083	2deu_D_G10_U11	AAA	AA08	87	0.14	AA08
084	2deu_D_U11_C12	AAA	AA04	36	0.44	AA04
085	2deu_D_C12_U13	AAw	AA01	81	0.28	AA01
086	2deu_D_U13_A14	AAu	AA12	38	0.42	AA12
087	2deu_D_A14_G15	AAA	AA04	41	0.59	AA04
088	2deu_D_G15_A16	NAN	NANT	0	2.33	OP08
089	2deu_D_A16_G17	NAN	NANT	0	1.80	OP30
090	2deu_D_G17_G18	NAN	NANT	0	0.91	AA01
091	2deu_D_G18_C19	NAN	NANT	0	0.59	OP12
092	2deu_D_C19_C20	NAN	NANT	0	1.22	OP05
093	2deu_D_C20.A_A21	NAN	NANT	0	0.73	OP06
094	2deu_D_C20_C20.A	NAN	NANT	0	1.12	OP21
095	2deu_D_A21_G22	AAu	AA07	36	0.30	AA07
096	2deu_D_G22_G23	AAA	AA00	50	0.24	AA00
097	2deu_D_G23_A24	AAA	AA00	53	0.27	AA00
098	2deu_D_A24_C25	AAA	AA00	49	0.25	AA00
099	2deu_D_C25_A26	AAA	AA00	56	0.31	AA00
100	2deu_D_A26_C27	AAA	AA00	27	0.35	AA00
101	2deu_D_C27_C28	AAA	AA00	66	0.23	AA00
102	2deu_D_C28_G29	AAA	AA00	87	0.13	AA00
103	2deu_D_G29_C30	AAA	AA00	84	0.14	AA00
104	2deu_D_C30_C31	AAA	AA00	37	0.26	AA00
105	2deu_D_C31_C32	AAA	AA00	11	0.42	AA00
106	2deu_D_C32_U33	AAA	AA00	32	0.42	AA00
107	2deu_D_U33_U34	NAN	NANT	0	1.18	OP17
108	2deu_D_U34_U35	NAN	NANT	0	1.50	OP31
109	2deu_D_U35_C36	AAA	AA00	17	0.31	AA00
110	2deu_D_C36_A37	NAN	NANT	0	0.46	AA10
111	2deu_D_A37_C38	NAN	NANT	0	0.49	AB2S
112	2deu_D_C38_G39	SYN	AAS1	57	0.30	AAS1
113	2deu_D_G39_G40	AAA	AA00	48	0.26	AA00
114	2deu_D_G40_C41	AAA	AA00	42	0.21	AA00
115	2deu_D_C41_G42	AAA	AA00	60	0.23	AA00
116	2deu_D_G42_G43	AAA	AA00	70	0.20	AA00
117	2deu_D_G43_U44	AAA	AA00	44	0.28	AA00
118	2deu_D_U44_A45	AAA	AA00	17	0.46	AA00
119	2deu_D_A45_A46	NAN	NANT	0	0.69	AA13
120	2deu_D_A46_C47	NAN	NANT	0	0.83	AA10
121	2deu_D_C47_A49	NAN	NANT	0	1.54	OP06
122	2deu_D_A49_G50	AAA	AA00	68	0.19	AA00
123	2deu_D_G50_G51	AAA	AA00	31	0.24	AA00
124	2deu_D_G51_G52	AAw	AA01	44	0.30	AA01
125	2deu_D_G52_G53	AAw	AA06	67	0.30	AA06
126	2deu_D_G53_U54	AAA	AA00	39	0.35	AA00
127	2deu_D_U54_U55	AAw	AA01	21	0.40	AA01
128	2deu_D_U55_C56	OPN	OP04	17	0.46	OP04
129	2deu_D_C56_G57	AAA	AA00	75	0.35	AA00
130	2deu_D_G57_A58	NAN	NANT	0	0.92	AA03
131	2deu_D_A58_A59	NAN	NANT	0	0.42	OP03
132	2deu_D_A59_U60	AAA	AA08	70	0.43	AA08
133	2deu_D_U60_C61	NAN	NANT	0	1.65	OP01
134	2deu_D_C61_C62	AAA	AA00	63	0.26	AA00
135	2deu_D_C62_C63	AAA	AA00	81	0.20	AA00
136	2deu_D_C63_C64	AAw	AA06	94	0.18	AA06
137	2deu_D_C64_U65	NAN	NANT	0	0.80	AA06
138	2deu_D_U65_A66	NAN	NANT	0	0.80	AA06
139	2deu_D_A66_G67	NAN	NANT	0	1.30	AA06
140	2deu_D_G67_G68	NAN	NANT	0	0.56	AA01
141	2deu_D_G68_G69	NAN	NANT	0	0.52	AA10
142	2deu_D_G69_G70	NAN	NANT	0	0.38	AA06
143	2deu_D_G70_A71	NAN	NANT	0	1.07	OP06
144	2deu_D_A71_C72	NAN	NANT	0	0.99	OP30
145	2deu_D_C72_G73	NAN	NANT	0	1.91	OP04
146	2deu_D_G73_C74	NAN	NANT	0	1.73	OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 146 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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