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Conformers: ABBIImiBZICOPNSYNN
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Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Results of the assignment of 143 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012der_C_G1_U2NANNANT00.64 AA07
0022der_C_U2_C3NANNANT01.14 OP01
0032der_C_C3_C4NANNANT02.29 OP29
0042der_C_C4_C5AAAAA00440.29 AA00
0052der_C_C5_C6NANNANT00.41 AA01
0062der_C_C6_U7NANNANT00.57 AA00
0072der_C_U7_U8NANNANT01.48 OP31
0082der_C_U8_C9NANNANT00.69 IC07
0092der_C_C9_G10NANNANT01.46 AA07
0102der_C_G10_U11AAAAA00590.24 AA00
0112der_C_U11_C12AAAAA08900.21 AA08
0122der_C_C12_U13AAwAA01790.33 AA01
0132der_C_U13_A14AAuAA12830.32 AA12
0142der_C_A14_G15AAAAA08660.45 AA08
0152der_C_G15_A16NANNANT02.28 OP08
0162der_C_A16_G17NANNANT01.73 OP30
0172der_C_G17_G18NANNANT00.47 IC04
0182der_C_G18_C19NANNANT01.76 ZZ02
0192der_C_C19_C20NANNANT01.80 OP02
0202der_C_C20.A_A21OPNOP0190.86 OP01
0212der_C_C20_C20.ANANNANT00.88 OP18
0222der_C_A21_G22AAuAA07820.24 AA07
0232der_C_G22_G23AAAAA00760.18 AA00
0242der_C_G23_A24AAAAA00650.26 AA00
0252der_C_A24_C25AAAAA00760.17 AA00
0262der_C_C25_A26AAAAA00810.31 AA00
0272der_C_A26_C27AAAAA00580.34 AA00
0282der_C_C27_C28AAAAA00920.14 AA00
0292der_C_C28_G29AAAAA00900.13 AA00
0302der_C_G29_C30AAAAA00790.18 AA00
0312der_C_C30_C31AAAAA00840.22 AA00
0322der_C_C31_C32AAAAA00540.31 AA00
0332der_C_C32_U33AAAAA00380.47 AA00
0342der_C_U33_U34NANNANT00.74 OP29
0352der_C_U34_U35NANNANT01.05 OP16
0362der_C_U35_C36AAAAA00920.12 AA00
0372der_C_C36_A37AAwAA01560.40 AA01
0382der_C_A37_C38NANNANT00.50 AB2S
0392der_C_C38_G39SYNAAS1520.30 AAS1
0402der_C_G39_G40AAAAA00690.17 AA00
0412der_C_G40_C41AAAAA00930.19 AA00
0422der_C_C41_G42AAAAA00730.26 AA00
0432der_C_G42_G43AAAAA00880.19 AA00
0442der_C_G43_U44AAAAA00760.26 AA00
0452der_C_U44_A45AAAAA08530.37 AA08
0462der_C_A45_A46NANNANT00.67 AA12
0472der_C_A46_C47NANNANT00.94 AA01
0482der_C_C47_A49NANNANT01.16 OP05
0492der_C_A49_G50AAAAA00300.32 AA00
0502der_C_G50_G51AAAAA00860.16 AA00
0512der_C_G51_G52NANNANT00.89 AA11
0522der_C_G52_G53AAwAA01690.28 AA01
0532der_C_G53_U54AAAAA08680.22 AA08
0542der_C_U54_U55AAwAA01520.32 AA01
0552der_C_U55_C56OPNOP04120.43 OP04
0562der_C_C56_G57NANNANT00.80 AB04
0572der_C_G57_A58NANNANT00.74 AB04
0582der_C_A58_A59NANNANT00.62 OP04
0592der_C_A59_U60AAAAA00200.56 AA00
0602der_C_U60_C61NANNANT00.33 OP12
0612der_C_C61_C62AAAAA08750.24 AA08
0622der_C_C62_C63AAAAA00860.16 AA00
0632der_C_C63_C64AAwAA11440.37 AA11
0642der_C_C64_U65NANNANT00.68 AA04
0652der_C_U65_A66AAwAA01300.34 AA01
0662der_C_A66_G67NANNANT00.68 AA06
0672der_C_G67_G68NANNANT00.73 AA06
0682der_C_G68_G69NANNANT00.82 AA06
0692der_C_G69_G70NANNANT00.62 AA10
0702der_C_G70_A71NANNANT01.12 OP17
0712der_C_A71_C72NANNANT01.10 OP29
0722der_C_C72_G73AAwAA06370.52 AA06
0732der_C_G73_C74NANNANT01.27 OP31
0742der_D_C3_C4NANNANT00.58 AA10
0752der_D_C4_C5AAwAA01620.20 AA01
0762der_D_C5_C6AAAAA08710.34 AA08
0772der_D_C6_U7AAAAA00620.26 AA00
0782der_D_U7_U8NANNANT02.40 OP24
0792der_D_U8_C9NANNANT00.71 IC07
0802der_D_C9_G10NANNANT01.48 AA07
0812der_D_G10_U11AAAAA00560.25 AA00
0822der_D_U11_C12AAAAA08840.20 AA08
0832der_D_C12_U13AAwAA01630.33 AA01
0842der_D_U13_A14AAuAA12850.29 AA12
0852der_D_A14_G15AAAAA08750.43 AA08
0862der_D_G15_A16NANNANT02.27 OP08
0872der_D_A16_G17NANNANT01.72 OP30
0882der_D_G17_G18NANNANT00.48 IC04
0892der_D_G18_C19NANNANT01.74 ZZ02
0902der_D_C19_C20NANNANT01.81 OP02
0912der_D_C20.A_A21NANNANT00.74 OP06
0922der_D_C20_C20.ANANNANT00.86 OP18
0932der_D_A21_G22AAuAA07790.25 AA07
0942der_D_G22_G23AAAAA00790.19 AA00
0952der_D_G23_A24AAAAA00660.24 AA00
0962der_D_A24_C25AAAAA00690.17 AA00
0972der_D_C25_A26AAAAA08800.28 AA08
0982der_D_A26_C27AAAAA00560.35 AA00
0992der_D_C27_C28AAAAA00940.15 AA00
1002der_D_C28_G29AAAAA00930.11 AA00
1012der_D_G29_C30AAAAA00880.15 AA00
1022der_D_C30_C31AAAAA00860.23 AA00
1032der_D_C31_C32AAAAA00310.35 AA00
1042der_D_C32_U33AAAAA00470.46 AA00
1052der_D_U33_U34NANNANT00.75 OP29
1062der_D_U34_U35NANNANT02.02 OP01
1072der_D_U35_C36AAAAA00820.15 AA00
1082der_D_C36_A37AAwAA01350.43 AA01
1092der_D_A37_C38NANNANT00.52 AB2S
1102der_D_C38_G39SYNAAS1320.30 AAS1
1112der_D_G39_G40AAAAA00740.16 AA00
1122der_D_G40_C41AAAAA00870.21 AA00
1132der_D_C41_G42AAAAA00770.23 AA00
1142der_D_G42_G43AAAAA00900.18 AA00
1152der_D_G43_U44AAAAA00750.26 AA00
1162der_D_U44_A45AAAAA08520.39 AA08
1172der_D_A45_A46NANNANT00.70 AA12
1182der_D_A46_C47NANNANT00.93 AA01
1192der_D_C47_A49NANNANT01.17 OP05
1202der_D_A49_G50AAAAA00290.33 AA00
1212der_D_G50_G51AAAAA00880.16 AA00
1222der_D_G51_G52NANNANT00.88 AA11
1232der_D_G52_G53AAwAA01670.26 AA01
1242der_D_G53_U54AAAAA08730.23 AA08
1252der_D_U54_U55AAwAA01690.30 AA01
1262der_D_U55_C56OPNOP04110.47 OP04
1272der_D_C56_G57NANNANT00.78 AB04
1282der_D_G57_A58NANNANT00.77 AB04
1292der_D_A58_A59NANNANT00.66 OP04
1302der_D_A59_U60AAAAA00170.51 AA00
1312der_D_U60_C61NANNANT00.35 OP12
1322der_D_C61_C62AAAAA08780.22 AA08
1332der_D_C62_C63AAAAA00790.17 AA00
1342der_D_C63_C64AAwAA11400.37 AA11
1352der_D_C64_U65AAAAA08730.39 AA08
1362der_D_U65_A66AAwAA11800.19 AA11
1372der_D_A66_G67AAwAA11800.34 AA11
1382der_D_G67_G68AAwAA06270.51 AA06
1392der_D_G68_G69AAAAA00260.14 AA00
1402der_D_G69_G70NANNANT01.61 OP17
1412der_D_G70_A71NANNANT00.72 AA06
1422der_D_A71_C72NANNANT00.74 AA01
1432der_D_C72_G73NANNANT00.81 OP09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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