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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter

Results of the assignment of 49 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012d5v_C_DT1001_DC1002BBBBB00640.36 BB00
022d5v_C_DC1002_DT1003BBBBB00840.21 BB00
032d5v_C_DT1003_DA1004BBBBB00800.17 BB00
042d5v_C_DA1004_DA1005BBBBB00700.24 BB00
052d5v_C_DA1005_DG1006BBBBB00490.26 BB00
062d5v_C_DG1006_DT1007BBwBB02530.31 BB02
072d5v_C_DT1007_DC1008BBBBB00850.24 BB00
082d5v_C_DC1008_DA1009BBBBB00390.52 BB00
092d5v_C_DA1009_DA1010BB2BB07750.30 BB07
102d5v_C_DA1010_DT1011BBBBB00470.20 BB00
112d5v_C_DT1011_DA1012NANNANT00.58 BB07
122d5v_C_DA1012_DA1013BBBBB00530.25 BB00
132d5v_C_DA1013_DT1014BBwBB02730.28 BB02
142d5v_D_DA1015_DT1016NANNANT00.73 AB02
152d5v_D_DT1016_DT1017BBBBB00740.18 BB00
162d5v_D_DT1017_DA1018BBBBB00810.24 BB00
172d5v_D_DA1018_DT1019BBBBB00760.23 BB00
182d5v_D_DT1019_DT1020BBBBB00480.24 BB00
192d5v_D_DT1020_DG1021BB2BB07640.45 BB07
202d5v_D_DG1021_DA1022BBBBB00670.25 BB00
212d5v_D_DA1022_DC1023B12BB05410.33 BB05
222d5v_D_DC1023_DT1024BBBBB00330.42 BB00
232d5v_D_DT1024_DT1025BBwBB02900.14 BB02
242d5v_D_DT1025_DA1026BBwBB03800.20 BB03
252d5v_D_DA1026_DG1027BBBBB00420.26 BB00
262d5v_E_DT2001_DC2002BBBBB00630.35 BB00
272d5v_E_DC2002_DT2003NANNANT00.87 AB02
282d5v_E_DT2003_DA2004BBBBB00180.37 BB00
292d5v_E_DA2004_DA2005B12BB04660.26 BB04
302d5v_E_DA2005_DG2006BBwBB02850.16 BB02
312d5v_E_DG2006_DT2007BBwBB02450.31 BB02
322d5v_E_DT2007_DC2008BBwBB03580.41 BB03
332d5v_E_DC2008_DA2009BBBBB00210.80 BB00
342d5v_E_DA2009_DA2010BB2BB07690.36 BB07
352d5v_E_DA2010_DT2011BBwBB02930.11 BB02
362d5v_E_DT2011_DA2012BBBBB00430.25 BB00
372d5v_E_DA2012_DA2013NANNANT00.69 BB07
382d5v_E_DA2013_DT2014BBwBB02820.21 BB02
392d5v_F_DA2015_DT2016NANNANT00.73 AB02
402d5v_F_DT2016_DT2017BBBBB00750.19 BB00
412d5v_F_DT2017_DA2018BBBBB00800.24 BB00
422d5v_F_DA2018_DT2019BBBBB00670.25 BB00
432d5v_F_DT2019_DT2020BBBBB00520.24 BB00
442d5v_F_DT2020_DG2021BB2BB07530.48 BB07
452d5v_F_DG2021_DA2022BBBBB00630.24 BB00
462d5v_F_DA2022_DC2023B12BB04690.21 BB04
472d5v_F_DC2023_DT2024BBBBB00610.27 BB00
482d5v_F_DT2024_DT2025BBwBB02780.16 BB02
492d5v_F_DT2025_DA2026BBwBB02100.51 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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