DNATCO v4.1: results

Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer

Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2d1a_A_G1_G2	AAA	AA00	69	0.18	AA00
02	2d1a_A_G2_G3	AAA	AA00	73	0.15	AA00
03	2d1a_A_G3_U4	AAA	AA00	75	0.20	AA00
04	2d1a_A_U4_C5	AAA	AA00	73	0.22	AA00
05	2d1a_A_C5_G6	AAw	AA01	86	0.21	AA01
06	2d1a_A_G6_G7	AAA	AA00	70	0.28	AA00
07	2d1a_A_G7_C8	AAw	AA01	73	0.23	AA01
08	2d1a_A_C8_U9	AAA	AA00	68	0.38	AA00
09	2d1a_A_U9_U10	AAA	AA00	74	0.22	AA00
10	2d1a_A_U10_G11	AAA	AA00	62	0.20	AA00
11	2d1a_A_G11_C12	AAA	AA00	72	0.22	AA00
12	2d1a_A_C12_U13	AAA	AA00	62	0.29	AA00
13	2d1a_A_U13_G14	AAA	AA00	68	0.20	AA00
14	2d1a_A_G14_A15	AAw	AA01	82	0.35	AA01
15	2d1a_A_A15_A16	AAw	AA11	46	0.44	AA11
16	2d1a_A_A16_G17	AAw	AA01	64	0.32	AA01
17	2d1a_A_G17_U18	AAA	AA00	77	0.20	AA00
18	2d1a_A_U18_G19	AAA	AA00	75	0.18	AA00
19	2d1a_A_G19_C20	AAA	AA00	71	0.20	AA00
20	2d1a_A_C20_A21	AAA	AA00	69	0.17	AA00
21	2d1a_A_A21_C22	AAw	AA01	88	0.22	AA01
22	2d1a_A_C22_A23	AAw	AA01	21	0.38	AA01
23	2d1a_A_A23_C24	AAA	AA08	27	0.48	AA08
24	2d1a_A_C24_G25	AAA	AA00	75	0.18	AA00
25	2d1a_A_G25_G26	AAA	AA00	67	0.16	AA00
26	2d1a_A_G26_C27	AAA	AA00	73	0.24	AA00
27	2d1a_A_C27_A28	AAw	AA01	91	0.20	AA01
28	2d1a_A_A28_A29	AAA	AA00	77	0.16	AA00
29	2d1a_A_A29_G30	NAN	NANT	0	0.60	AA01
30	2d1a_A_G30_A31	NAN	NANT	0	0.97	AA01
31	2d1a_A_A31_G32	AAw	AA01	46	0.44	AA01
32	2d1a_A_G32_G33	NAN	NANT	0	0.96	BB12
33	2d1a_A_G33_C34	NAN	NANT	0	0.51	OP26
34	2d1a_A_C34_G35	AAA	AA00	57	0.22	AA00
35	2d1a_A_G35_A36	AAA	AA00	76	0.16	AA00
36	2d1a_A_A36_C37	AAA	AA00	75	0.18	AA00
37	2d1a_A_C37_C38	AAA	AA00	80	0.18	AA00
38	2d1a_A_C38_C39	AAA	AA00	69	0.24	AA00
39	2d1a_B_G1_G2	AAA	AA00	67	0.19	AA00
40	2d1a_B_G2_G3	AAA	AA00	72	0.16	AA00
41	2d1a_B_G3_U4	AAA	AA00	74	0.20	AA00
42	2d1a_B_U4_C5	AAA	AA00	73	0.22	AA00
43	2d1a_B_C5_G6	AAw	AA01	86	0.20	AA01
44	2d1a_B_G6_G7	AAA	AA00	70	0.28	AA00
45	2d1a_B_G7_C8	AAw	AA01	74	0.22	AA01
46	2d1a_B_C8_U9	AAA	AA00	66	0.39	AA00
47	2d1a_B_U9_U10	AAA	AA00	76	0.22	AA00
48	2d1a_B_U10_G11	AAA	AA00	58	0.21	AA00
49	2d1a_B_G11_C12	AAA	AA00	68	0.24	AA00
50	2d1a_B_C12_U13	AAA	AA00	66	0.29	AA00
51	2d1a_B_U13_G14	AAw	AA01	85	0.30	AA01
52	2d1a_B_G14_A15	AAA	AA00	70	0.24	AA00
53	2d1a_B_A15_A16	AAw	AA01	82	0.25	AA01
54	2d1a_B_A16_G17	AAw	AA01	84	0.28	AA01
55	2d1a_B_G17_U18	AAA	AA00	76	0.20	AA00
56	2d1a_B_U18_G19	AAA	AA00	64	0.17	AA00
57	2d1a_B_G19_C20	AAA	AA00	71	0.19	AA00
58	2d1a_B_C20_A21	AAA	AA00	71	0.22	AA00
59	2d1a_B_A21_C22	AAA	AA00	70	0.23	AA00
60	2d1a_B_C22_A23	AAA	AA00	59	0.33	AA00
61	2d1a_B_A23_C24	AAw	AA01	75	0.30	AA01
62	2d1a_B_C24_G25	AAA	AA00	77	0.17	AA00
63	2d1a_B_G25_G26	AAA	AA00	71	0.16	AA00
64	2d1a_B_G26_C27	AAA	AA00	73	0.24	AA00
65	2d1a_B_C27_A28	AAw	AA01	90	0.21	AA01
66	2d1a_B_A28_A29	AAA	AA00	78	0.16	AA00
67	2d1a_B_A29_G30	NAN	NANT	0	0.61	AA01
68	2d1a_B_G30_A31	NAN	NANT	0	0.96	AA01
69	2d1a_B_A31_G32	AAw	AA01	48	0.44	AA01
70	2d1a_B_G32_G33	NAN	NANT	0	0.95	BB12
71	2d1a_B_G33_C34	NAN	NANT	0	0.52	OP26
72	2d1a_B_C34_G35	AAA	AA00	57	0.22	AA00
73	2d1a_B_G35_A36	AAA	AA00	76	0.16	AA00
74	2d1a_B_A36_C37	AAA	AA00	75	0.17	AA00
75	2d1a_B_C37_C38	AAA	AA00	79	0.18	AA00
76	2d1a_B_C38_C39	AAA	AA00	69	0.24	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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