DNATCO v4.1: results

Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8

Results of the assignment of 236 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2czj_B_G1_G2	AAw	AA06	67	0.16	AA06
002	2czj_B_G2_G3	AAA	AA00	20	0.40	AA00
003	2czj_B_G3_G4	AAA	AA00	74	0.23	AA00
004	2czj_B_G4_G5	AAA	AA00	67	0.24	AA00
005	2czj_B_G5_U6	AAA	AA00	70	0.26	AA00
006	2czj_B_U6_G7	NAN	NANT	0	0.81	IC03
007	2czj_B_G7_A8	NAN	NANT	0	2.21	OP27
008	2czj_B_A8_A9	NAN	NANT	0	1.52	OP04
009	2czj_B_A9_A10	NAN	NANT	0	0.86	OP08
010	2czj_B_A10_C11	NAN	NANT	0	1.44	AA11
011	2czj_B_C11_G12	NAN	NANT	0	0.96	OP06
012	2czj_B_G12_G13	NAN	NANT	0	0.65	AB02
013	2czj_B_G13_U14	NAN	NANT	0	1.80	IC07
014	2czj_B_U14_C15	NAN	NANT	0	1.68	ZZ01
015	2czj_B_C15_U16	NAN	NANT	0	1.07	OP17
016	2czj_B_U16_C17	NAN	NANT	0	1.65	OP06
017	2czj_B_C17_G18	AAA	AA09	40	0.36	AA09
018	2czj_B_G18_A19	NAN	NANT	0	1.81	OP26
019	2czj_B_A19_C20	AAA	AA00	37	0.43	AA00
020	2czj_B_C20_A21	AAA	AA00	88	0.21	AA00
021	2czj_B_A21_G22	AAA	AA00	68	0.20	AA00
022	2czj_B_G22_G23	AAw	AA06	73	0.41	AA06
023	2czj_B_G23_G24	AAA	AA08	67	0.40	AA08
024	2czj_B_G24_G25	AAA	AA00	43	0.33	AA00
025	2czj_B_G25_U26	AAA	AA00	47	0.30	AA00
026	2czj_B_U26_U27	NAN	NANT	0	2.17	OP17
027	2czj_B_U27_C28	NAN	NANT	0	1.13	OP01
028	2czj_B_C28_G29	NAN	NANT	0	2.38	OP24
029	2czj_B_G29_C30	AAw	AA05	40	0.29	AA05
030	2czj_B_C30_C31	AAA	AA08	60	0.38	AA08
031	2czj_B_C31_U32	AAA	AA00	70	0.28	AA00
032	2czj_B_U32_U33	AAA	AA00	87	0.16	AA00
033	2czj_B_U33_U34	AAA	AA04	70	0.34	AA04
034	2czj_B_U34_G35	AAA	AA00	84	0.23	AA00
035	2czj_B_G35_G46	NAN	NANT	0	0.65	AA09
036	2czj_B_G46_A47	NAN	NANT	0	1.42	AA11
037	2czj_B_A47_C48	NAN	NANT	0	0.88	AA11
038	2czj_B_C48_G49	NAN	NANT	0	0.85	OP30
039	2czj_B_G49_U50	AAA	AA04	23	0.53	AA04
040	2czj_B_U50_G51	AAw	AA01	18	0.55	AA01
041	2czj_B_G51_G52	AAw	AA06	51	0.29	AA06
042	2czj_B_G52_G53	AAw	AA11	25	0.47	AA11
043	2czj_B_G53_5MU54	AAA	AA00	45	0.30	AA00
044	2czj_B_C56_G57	AAw	AA06	69	0.53	AA06
045	2czj_B_G57_A58	NAN	NANT	0	0.61	AB04
046	2czj_B_A58_C59	NAN	NANT	0	0.56	OP04
047	2czj_B_C59_U60	NAN	NANT	0	0.62	AA06
048	2czj_B_U60_C61	NAN	NANT	0	1.50	OP01
049	2czj_B_C61_C62	AAw	AA01	70	0.20	AA01
050	2czj_B_C62_C63	AAA	AA08	75	0.32	AA08
051	2czj_B_C63_A64	AAw	AA11	52	0.34	AA11
052	2czj_B_A64_C65	AAA	AA08	46	0.41	AA08
053	2czj_B_C65_C66	AAw	AA01	55	0.27	AA01
054	2czj_B_C66_A67	AAA	AA08	58	0.32	AA08
055	2czj_B_A67_C68	AAA	AA00	49	0.15	AA00
056	2czj_B_C68_C69	AAA	AA08	85	0.15	AA08
057	2czj_B_C69_U70	AAA	AA00	60	0.39	AA00
058	2czj_B_U70_C71	AAA	AA00	26	0.35	AA00
059	2czj_B_C71_C72	NAN	NANT	0	0.78	AA06
060	2czj_D_G1_G2	AAw	AA05	15	0.71	AA05
061	2czj_D_G2_G3	NAN	NANT	0	0.62	AA12
062	2czj_D_G3_G4	AAA	AA00	43	0.29	AA00
063	2czj_D_G4_G5	AAA	AA00	63	0.22	AA00
064	2czj_D_G5_U6	AAA	AA00	87	0.19	AA00
065	2czj_D_U6_G7	NAN	NANT	0	0.51	AB04
066	2czj_D_G7_A8	NAN	NANT	0	2.29	OP17
067	2czj_D_A8_A9	NAN	NANT	0	1.26	OP17
068	2czj_D_A9_A10	NAN	NANT	0	0.70	AA07
069	2czj_D_A10_C11	NAN	NANT	0	0.90	BB02
070	2czj_D_C11_G12	NAN	NANT	0	1.07	OP06
071	2czj_D_G12_G13	NAN	NANT	0	0.66	AA01
072	2czj_D_G13_U14	NAN	NANT	0	1.27	OP17
073	2czj_D_U14_C15	NAN	NANT	0	1.06	AA04
074	2czj_D_C15_U16	NAN	NANT	0	0.99	OP17
075	2czj_D_U16_C17	NAN	NANT	0	1.44	OP14
076	2czj_D_C17_G18	AAA	AA02	9	0.51	AA02
077	2czj_D_G18_A19	NAN	NANT	0	1.26	AB02
078	2czj_D_A19_C20	AAA	AA08	77	0.37	AA08
079	2czj_D_C20_A21	AAA	AA08	82	0.29	AA08
080	2czj_D_A21_G22	AAA	AA00	78	0.15	AA00
081	2czj_D_G22_G23	NAN	NANT	0	0.59	AA03
082	2czj_D_G23_G24	AAA	AA00	62	0.35	AA00
083	2czj_D_G24_G25	AAA	AA00	66	0.21	AA00
084	2czj_D_G25_U26	AAA	AA00	68	0.29	AA00
085	2czj_D_U26_U27	NAN	NANT	0	1.59	OP29
086	2czj_D_U27_C28	NAN	NANT	0	1.29	OP19
087	2czj_D_C28_G29	NAN	NANT	0	1.87	OP24
088	2czj_D_G29_C30	AAw	AA05	19	0.46	AA05
089	2czj_D_C30_C31	AAA	AA00	62	0.27	AA00
090	2czj_D_C31_U32	AAA	AA08	73	0.25	AA08
091	2czj_D_U32_U33	AAA	AA00	56	0.29	AA00
092	2czj_D_U33_U34	AAA	AA00	66	0.22	AA00
093	2czj_D_U34_G35	AAA	AA08	81	0.27	AA08
094	2czj_D_G35_G46	NAN	NANT	0	0.59	AB03
095	2czj_D_G46_A47	NAN	NANT	0	1.42	OP14
096	2czj_D_A47_C48	NAN	NANT	0	0.79	AA11
097	2czj_D_C48_G49	NAN	NANT	0	1.05	OP30
098	2czj_D_G49_U50	AAA	AA04	30	0.43	AA04
099	2czj_D_U50_G51	AAw	AA01	39	0.33	AA01
100	2czj_D_G51_G52	NAN	NANT	0	0.47	AA06
101	2czj_D_G52_G53	AAw	AA06	50	0.32	AA06
102	2czj_D_G53_5MU54	NAN	NANT	0	0.77	AA12
103	2czj_D_C56_G57	AAw	AA10	17	0.51	AA10
104	2czj_D_G57_A58	NAN	NANT	0	0.64	AB04
105	2czj_D_A58_C59	NAN	NANT	0	0.80	OP04
106	2czj_D_C59_U60	NAN	NANT	0	0.83	AA06
107	2czj_D_U60_C61	NAN	NANT	0	1.78	OP10
108	2czj_D_C61_C62	AAw	AA01	37	0.25	AA01
109	2czj_D_C62_C63	NAN	NANT	0	0.85	AA03
110	2czj_D_C63_A64	AAw	AA01	20	0.48	AA01
111	2czj_D_A64_C65	AAA	AA00	19	0.42	AA00
112	2czj_D_C65_C66	AAw	AA01	46	0.27	AA01
113	2czj_D_C66_A67	AAA	AA08	60	0.42	AA08
114	2czj_D_A67_C68	AAA	AA08	84	0.22	AA08
115	2czj_D_C68_C69	AAA	AA00	60	0.25	AA00
116	2czj_D_C69_U70	AAA	AA08	80	0.25	AA08
117	2czj_D_U70_C71	AAA	AA00	79	0.20	AA00
118	2czj_D_C71_C72	AAw	AA01	39	0.36	AA01
119	2czj_F_G1_G2	AAw	AA06	72	0.15	AA06
120	2czj_F_G2_G3	AAA	AA00	27	0.40	AA00
121	2czj_F_G3_G4	AAA	AA00	77	0.23	AA00
122	2czj_F_G4_G5	AAA	AA00	71	0.23	AA00
123	2czj_F_G5_U6	AAA	AA00	69	0.26	AA00
124	2czj_F_U6_G7	NAN	NANT	0	0.82	IC03
125	2czj_F_G7_A8	NAN	NANT	0	1.22	OP06
126	2czj_F_A8_A9	NAN	NANT	0	1.52	OP04
127	2czj_F_A9_A10	NAN	NANT	0	0.86	OP08
128	2czj_F_A10_C11	NAN	NANT	0	1.43	AA11
129	2czj_F_C11_G12	NAN	NANT	0	0.96	OP06
130	2czj_F_G12_G13	NAN	NANT	0	0.64	AB02
131	2czj_F_G13_U14	NAN	NANT	0	1.80	IC07
132	2czj_F_U14_C15	NAN	NANT	0	1.58	ZZ01
133	2czj_F_C15_U16	NAN	NANT	0	1.07	OP17
134	2czj_F_U16_C17	NAN	NANT	0	1.65	OP06
135	2czj_F_C17_G18	AAA	AA09	39	0.35	AA09
136	2czj_F_G18_A19	NAN	NANT	0	1.81	OP26
137	2czj_F_A19_C20	AAA	AA04	59	0.45	AA04
138	2czj_F_C20_A21	AAA	AA00	89	0.21	AA00
139	2czj_F_A21_G22	AAA	AA00	67	0.19	AA00
140	2czj_F_G22_G23	AAw	AA06	71	0.41	AA06
141	2czj_F_G23_G24	AAA	AA08	74	0.40	AA08
142	2czj_F_G24_G25	AAA	AA00	55	0.32	AA00
143	2czj_F_G25_U26	AAA	AA00	49	0.31	AA00
144	2czj_F_U26_U27	NAN	NANT	0	2.18	OP17
145	2czj_F_U27_C28	NAN	NANT	0	1.13	OP01
146	2czj_F_C28_G29	NAN	NANT	0	2.38	OP24
147	2czj_F_G29_C30	AAw	AA05	38	0.29	AA05
148	2czj_F_C30_C31	AAA	AA08	62	0.37	AA08
149	2czj_F_C31_U32	AAA	AA00	63	0.27	AA00
150	2czj_F_U32_U33	AAA	AA00	86	0.15	AA00
151	2czj_F_U33_U34	AAA	AA00	21	0.27	AA00
152	2czj_F_U34_G35	AAA	AA00	95	0.20	AA00
153	2czj_F_G35_G46	NAN	NANT	0	0.70	AA09
154	2czj_F_G46_A47	NAN	NANT	0	1.42	AA11
155	2czj_F_A47_C48	NAN	NANT	0	0.88	AA11
156	2czj_F_C48_G49	NAN	NANT	0	0.85	OP30
157	2czj_F_G49_U50	AAA	AA04	25	0.53	AA04
158	2czj_F_U50_G51	AAw	AA01	17	0.55	AA01
159	2czj_F_G51_G52	AAw	AA06	65	0.28	AA06
160	2czj_F_G52_G53	AAw	AA11	37	0.46	AA11
161	2czj_F_G53_5MU54	AAA	AA00	44	0.27	AA00
162	2czj_F_C56_G57	AAw	AA06	69	0.52	AA06
163	2czj_F_G57_A58	NAN	NANT	0	0.61	AB04
164	2czj_F_A58_C59	NAN	NANT	0	0.56	OP04
165	2czj_F_C59_U60	NAN	NANT	0	0.62	AA06
166	2czj_F_U60_C61	NAN	NANT	0	1.48	OP01
167	2czj_F_C61_C62	AAw	AA01	72	0.20	AA01
168	2czj_F_C62_C63	AAA	AA08	77	0.33	AA08
169	2czj_F_C63_A64	AAw	AA11	54	0.34	AA11
170	2czj_F_A64_C65	AAA	AA08	50	0.39	AA08
171	2czj_F_C65_C66	AAw	AA01	56	0.35	AA01
172	2czj_F_C66_A67	AAA	AA08	58	0.31	AA08
173	2czj_F_A67_C68	AAA	AA00	48	0.14	AA00
174	2czj_F_C68_C69	AAA	AA08	84	0.15	AA08
175	2czj_F_C69_U70	AAA	AA00	63	0.39	AA00
176	2czj_F_U70_C71	AAA	AA00	16	0.37	AA00
177	2czj_F_C71_C72	NAN	NANT	0	0.78	AA06
178	2czj_H_G1_G2	AAw	AA05	16	0.71	AA05
179	2czj_H_G2_G3	NAN	NANT	0	0.63	AA12
180	2czj_H_G3_G4	AAA	AA00	43	0.28	AA00
181	2czj_H_G4_G5	AAA	AA00	64	0.22	AA00
182	2czj_H_G5_U6	AAA	AA00	87	0.19	AA00
183	2czj_H_U6_G7	NAN	NANT	0	0.49	AB04
184	2czj_H_G7_A8	NAN	NANT	0	1.60	IC07
185	2czj_H_A8_A9	NAN	NANT	0	1.26	OP17
186	2czj_H_A9_A10	NAN	NANT	0	0.69	AA07
187	2czj_H_A10_C11	NAN	NANT	0	0.90	BB02
188	2czj_H_C11_G12	NAN	NANT	0	1.07	OP06
189	2czj_H_G12_G13	NAN	NANT	0	0.67	AA01
190	2czj_H_G13_U14	NAN	NANT	0	1.27	OP17
191	2czj_H_U14_C15	NAN	NANT	0	1.09	AA08
192	2czj_H_C15_U16	NAN	NANT	0	0.99	OP17
193	2czj_H_U16_C17	NAN	NANT	0	1.45	OP14
194	2czj_H_C17_G18	AAA	AA02	8	0.51	AA02
195	2czj_H_G18_A19	NAN	NANT	0	1.26	AB02
196	2czj_H_A19_C20	AAA	AA08	78	0.38	AA08
197	2czj_H_C20_A21	AAA	AA08	82	0.31	AA08
198	2czj_H_A21_G22	AAA	AA00	71	0.17	AA00
199	2czj_H_G22_G23	NAN	NANT	0	0.60	AA03
200	2czj_H_G23_G24	AAA	AA00	61	0.36	AA00
201	2czj_H_G24_G25	AAA	AA00	66	0.21	AA00
202	2czj_H_G25_U26	AAA	AA00	68	0.29	AA00
203	2czj_H_U26_U27	NAN	NANT	0	1.59	OP29
204	2czj_H_U27_C28	NAN	NANT	0	1.29	OP19
205	2czj_H_C28_G29	NAN	NANT	0	1.87	OP24
206	2czj_H_G29_C30	AAw	AA05	21	0.47	AA05
207	2czj_H_C30_C31	AAA	AA00	57	0.27	AA00
208	2czj_H_C31_U32	AAA	AA08	75	0.26	AA08
209	2czj_H_U32_U33	AAA	AA00	60	0.28	AA00
210	2czj_H_U33_U34	AAA	AA00	67	0.22	AA00
211	2czj_H_U34_G35	AAA	AA08	78	0.28	AA08
212	2czj_H_G35_G46	NAN	NANT	0	0.67	AA08
213	2czj_H_G46_A47	NAN	NANT	0	1.42	OP14
214	2czj_H_A47_C48	NAN	NANT	0	0.78	AA11
215	2czj_H_C48_G49	NAN	NANT	0	1.10	OP29
216	2czj_H_G49_U50	AAA	AA00	14	0.36	AA00
217	2czj_H_U50_G51	AAw	AA01	36	0.33	AA01
218	2czj_H_G51_G52	NAN	NANT	0	0.47	AA06
219	2czj_H_G52_G53	AAw	AA06	50	0.32	AA06
220	2czj_H_G53_5MU54	AAA	AA00	5	0.52	AA00
221	2czj_H_C56_G57	AAw	AA10	18	0.51	AA10
222	2czj_H_G57_A58	NAN	NANT	0	0.64	AB04
223	2czj_H_A58_C59	NAN	NANT	0	0.80	OP04
224	2czj_H_C59_U60	NAN	NANT	0	0.41	AA05
225	2czj_H_U60_C61	NAN	NANT	0	1.85	OP10
226	2czj_H_C61_C62	AAw	AA01	37	0.24	AA01
227	2czj_H_C62_C63	NAN	NANT	0	0.84	AA03
228	2czj_H_C63_A64	AAw	AA01	22	0.48	AA01
229	2czj_H_A64_C65	AAA	AA00	28	0.41	AA00
230	2czj_H_C65_C66	NAN	NANT	0	0.40	AA01
231	2czj_H_C66_A67	AAA	AA08	55	0.43	AA08
232	2czj_H_A67_C68	AAA	AA08	81	0.22	AA08
233	2czj_H_C68_C69	AAA	AA00	61	0.24	AA00
234	2czj_H_C69_U70	AAA	AA08	81	0.24	AA08
235	2czj_H_U70_C71	AAA	AA00	80	0.20	AA00
236	2czj_H_C71_C72	AAw	AA01	36	0.37	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 236 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible