DNATCO v4.1: results

Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2cv2_C_G501_G502	AAA	AA00	68	0.21	AA00
002	2cv2_C_G502_C503	AAA	AA00	88	0.18	AA00
003	2cv2_C_C503_C504	AAA	AA00	96	0.11	AA00
004	2cv2_C_C504_C505	AAA	AA00	93	0.11	AA00
005	2cv2_C_C505_C506	AAA	AA00	93	0.17	AA00
006	2cv2_C_C506_A507	A-B	AB04	36	0.36	AB04
007	2cv2_C_A507_U508	NAN	NANT	0	1.68	OP16
008	2cv2_C_U508_C509	NAN	NANT	0	0.46	IC07
009	2cv2_C_C509_G510	NAN	NANT	0	1.31	OP12
010	2cv2_C_G510_U511	AAA	AA00	63	0.22	AA00
011	2cv2_C_U511_C512	AAA	AA00	71	0.22	AA00
012	2cv2_C_C512_U513	AAw	AA01	84	0.26	AA01
013	2cv2_C_U513_A514	AAu	AA12	67	0.38	AA12
014	2cv2_C_A514_G515	A-B	AB05	11	0.46	AB05
015	2cv2_C_G515_C516	NAN	NANT	0	1.27	AA05
016	2cv2_C_C516_G518	NAN	NANT	0	1.29	OP21
017	2cv2_C_G518_G519	NAN	NANT	0	1.04	AB02
018	2cv2_C_G519_U520	NAN	NANT	0	1.43	OP01
019	2cv2_C_U520.A_A521	NAN	NANT	0	0.71	OP29
020	2cv2_C_U520_U520.A	NAN	NANT	0	0.49	OP04
021	2cv2_C_A521_G522	AAu	AA07	70	0.36	AA07
022	2cv2_C_G522_G523	AAA	AA08	69	0.26	AA08
023	2cv2_C_G523_A524	AAA	AA00	80	0.13	AA00
024	2cv2_C_A524_C525	AAA	AA00	87	0.16	AA00
025	2cv2_C_C525_G526	AAA	AA00	51	0.41	AA00
026	2cv2_C_G526_C527	AAA	AA00	93	0.19	AA00
027	2cv2_C_C527_G528	AAA	AA00	80	0.17	AA00
028	2cv2_C_G528_G529	AAA	AA00	91	0.10	AA00
029	2cv2_C_G529_C530	AAA	AA00	92	0.13	AA00
030	2cv2_C_C530_C531	AAA	AA00	98	0.11	AA00
031	2cv2_C_C531_C532	AAA	AA00	71	0.33	AA00
032	2cv2_C_C532_U533	AAA	AA08	51	0.47	AA08
033	2cv2_C_U533_C534	NAN	NANT	0	0.64	OP04
034	2cv2_C_C534_U535	AAu	AA12	87	0.19	AA12
035	2cv2_C_U535_C536	AAA	AA00	73	0.28	AA00
036	2cv2_C_C536_A537	AAw	AA01	79	0.19	AA01
037	2cv2_C_A537_A538	AAA	AA08	75	0.31	AA08
038	2cv2_C_A538_G539	AAA	AA00	73	0.34	AA00
039	2cv2_C_G539_G540	AAA	AA00	89	0.07	AA00
040	2cv2_C_G540_C541	AAA	AA00	97	0.12	AA00
041	2cv2_C_C541_C542	AAA	AA00	89	0.16	AA00
042	2cv2_C_C542_G543	AAA	AA00	67	0.27	AA00
043	2cv2_C_G543_A544	AAA	AA00	87	0.17	AA00
044	2cv2_C_A544_A545	AAA	AA00	74	0.34	AA00
045	2cv2_C_A545_A546	NAN	NANT	0	0.78	AA07
046	2cv2_C_A546_C548	NAN	NANT	0	1.34	OP08
047	2cv2_C_C548_G549	NAN	NANT	0	1.08	OP05
048	2cv2_C_G549_G550	AAA	AA00	72	0.15	AA00
049	2cv2_C_G550_G551	AAA	AA00	67	0.19	AA00
050	2cv2_C_G551_G552	AAw	AA01	57	0.31	AA01
051	2cv2_C_G552_G553	NAN	NANT	0	0.55	AA10
052	2cv2_C_G553_U554	AAA	AA08	45	0.36	AA08
053	2cv2_C_U554_U555	AAA	AA08	85	0.25	AA08
054	2cv2_C_U555_C556	OPN	OP04	78	0.22	OP04
055	2cv2_C_C556_G557	AAA	AA00	32	0.40	AA00
056	2cv2_C_G557_A558	NAN	NANT	0	0.99	AA11
057	2cv2_C_A558_U559	NAN	NANT	0	1.35	OP05
058	2cv2_C_U559_U560	A-B	AB01	28	0.52	AB01
059	2cv2_C_U560_C561	OPN	OP12	75	0.21	OP12
060	2cv2_C_C561_C562	AAA	AA00	52	0.26	AA00
061	2cv2_C_C562_C563	AAA	AA00	79	0.18	AA00
062	2cv2_C_C563_C564	AAA	AA00	97	0.10	AA00
063	2cv2_C_C564_C565	AAA	AA00	88	0.19	AA00
064	2cv2_C_C565_U566	AAA	AA00	72	0.24	AA00
065	2cv2_C_U566_G567	AAA	AA00	95	0.15	AA00
066	2cv2_C_G567_G568	AAA	AA00	87	0.12	AA00
067	2cv2_C_G568_G569	AAA	AA00	85	0.13	AA00
068	2cv2_C_G569_G570	AAA	AA00	79	0.18	AA00
069	2cv2_C_G570_U571	AAA	AA00	73	0.22	AA00
070	2cv2_C_U571_C572	AAA	AA00	66	0.19	AA00
071	2cv2_C_C572_A573	NAN	NANT	0	1.93	OP10
072	2cv2_C_A573_C574	NAN	NANT	0	1.42	OP18
073	2cv2_C_C574_C575	NAN	NANT	0	1.19	OP31
074	2cv2_C_C575_A576	AAw	AA05	54	0.56	AA05
075	2cv2_D_G501_G502	AAA	AA00	79	0.18	AA00
076	2cv2_D_G502_C503	AAA	AA00	86	0.18	AA00
077	2cv2_D_C503_C504	AAA	AA00	88	0.12	AA00
078	2cv2_D_C504_C505	AAA	AA00	95	0.12	AA00
079	2cv2_D_C505_C506	AAA	AA00	96	0.15	AA00
080	2cv2_D_C506_A507	NAN	NANT	0	0.41	AB04
081	2cv2_D_A507_U508	NAN	NANT	0	1.64	OP16
082	2cv2_D_U508_C509	NAN	NANT	0	0.50	IC07
083	2cv2_D_C509_G510	NAN	NANT	0	1.75	OP04
084	2cv2_D_G510_U511	AAA	AA00	66	0.23	AA00
085	2cv2_D_U511_C512	AAA	AA00	73	0.21	AA00
086	2cv2_D_C512_U513	AAw	AA01	89	0.26	AA01
087	2cv2_D_U513_A514	AAu	AA12	72	0.39	AA12
088	2cv2_D_A514_G515	A-B	AB01	16	0.63	AB01
089	2cv2_D_G515_C516	NAN	NANT	0	1.26	AA05
090	2cv2_D_C516_G518	NAN	NANT	0	1.29	OP21
091	2cv2_D_G518_G519	NAN	NANT	0	1.02	AB02
092	2cv2_D_G519_U520	NAN	NANT	0	1.43	OP01
093	2cv2_D_U520.A_A521	NAN	NANT	0	0.65	OP29
094	2cv2_D_U520_U520.A	NAN	NANT	0	0.45	OP04
095	2cv2_D_A521_G522	AAu	AA07	68	0.34	AA07
096	2cv2_D_G522_G523	AAA	AA08	70	0.26	AA08
097	2cv2_D_G523_A524	AAA	AA00	88	0.11	AA00
098	2cv2_D_A524_C525	AAA	AA00	91	0.14	AA00
099	2cv2_D_C525_G526	AAA	AA00	61	0.38	AA00
100	2cv2_D_G526_C527	AAA	AA00	87	0.19	AA00
101	2cv2_D_C527_G528	AAA	AA00	78	0.17	AA00
102	2cv2_D_G528_G529	AAA	AA00	92	0.10	AA00
103	2cv2_D_G529_C530	AAA	AA00	89	0.14	AA00
104	2cv2_D_C530_C531	AAA	AA00	98	0.14	AA00
105	2cv2_D_C531_C532	AAA	AA00	66	0.32	AA00
106	2cv2_D_C532_U533	AAA	AA08	49	0.50	AA08
107	2cv2_D_U533_C534	NAN	NANT	0	0.61	OP04
108	2cv2_D_C534_U535	AAu	AA12	86	0.18	AA12
109	2cv2_D_U535_C536	AAA	AA00	76	0.27	AA00
110	2cv2_D_C536_A537	AAw	AA01	80	0.18	AA01
111	2cv2_D_A537_A538	AAA	AA08	74	0.32	AA08
112	2cv2_D_A538_G539	AAA	AA00	66	0.38	AA00
113	2cv2_D_G539_G540	AAA	AA00	90	0.08	AA00
114	2cv2_D_G540_C541	AAA	AA00	97	0.10	AA00
115	2cv2_D_C541_C542	AAA	AA00	89	0.17	AA00
116	2cv2_D_C542_G543	AAA	AA00	88	0.28	AA00
117	2cv2_D_G543_A544	AAA	AA00	85	0.18	AA00
118	2cv2_D_A544_A545	AAA	AA00	50	0.39	AA00
119	2cv2_D_A545_A546	NAN	NANT	0	0.85	AA07
120	2cv2_D_A546_C548	NAN	NANT	0	0.88	BB13
121	2cv2_D_C548_G549	NAN	NANT	0	1.06	OP05
122	2cv2_D_G549_G550	AAA	AA00	75	0.14	AA00
123	2cv2_D_G550_G551	AAA	AA00	71	0.19	AA00
124	2cv2_D_G551_G552	AAw	AA01	58	0.32	AA01
125	2cv2_D_G552_G553	NAN	NANT	0	0.55	AA10
126	2cv2_D_G553_U554	AAA	AA08	48	0.38	AA08
127	2cv2_D_U554_U555	AAA	AA08	85	0.26	AA08
128	2cv2_D_U555_C556	OPN	OP04	82	0.21	OP04
129	2cv2_D_C556_G557	AAA	AA00	36	0.40	AA00
130	2cv2_D_G557_A558	NAN	NANT	0	0.99	AA11
131	2cv2_D_A558_U559	NAN	NANT	0	1.34	OP05
132	2cv2_D_U559_U560	A-B	AB01	22	0.53	AB01
133	2cv2_D_U560_C561	OPN	OP12	65	0.28	OP12
134	2cv2_D_C561_C562	AAA	AA00	54	0.25	AA00
135	2cv2_D_C562_C563	AAA	AA00	78	0.18	AA00
136	2cv2_D_C563_C564	AAA	AA00	94	0.11	AA00
137	2cv2_D_C564_C565	AAA	AA00	88	0.21	AA00
138	2cv2_D_C565_U566	AAA	AA00	80	0.26	AA00
139	2cv2_D_U566_G567	AAA	AA00	91	0.16	AA00
140	2cv2_D_G567_G568	AAA	AA00	82	0.12	AA00
141	2cv2_D_G568_G569	AAA	AA00	60	0.13	AA00
142	2cv2_D_G569_G570	AAA	AA00	86	0.19	AA00
143	2cv2_D_G570_U571	AAA	AA00	79	0.20	AA00
144	2cv2_D_U571_C572	AAA	AA00	73	0.16	AA00
145	2cv2_D_C572_A573	NAN	NANT	0	1.94	OP10
146	2cv2_D_A573_C574	NAN	NANT	0	1.42	OP18
147	2cv2_D_C574_C575	NAN	NANT	0	1.21	OP31
148	2cv2_D_C575_A576	AAw	AA06	71	0.40	AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible