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Conformers: ABBIImiBZICOPNSYNN
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Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012cv1_C_G501_G502AAAAA00520.27 AA00
0022cv1_C_G502_C503AAAAA00820.19 AA00
0032cv1_C_C503_C504AAAAA00950.14 AA00
0042cv1_C_C504_C505AAAAA00900.13 AA00
0052cv1_C_C505_C506AAAAA00880.20 AA00
0062cv1_C_C506_A507A-BAB04250.40 AB04
0072cv1_C_A507_U508NANNANT01.60 OP16
0082cv1_C_U508_C509NANNANT00.49 IC07
0092cv1_C_C509_G510NANNANT01.33 OP12
0102cv1_C_G510_U511AAAAA00580.19 AA00
0112cv1_C_U511_C512AAAAA00600.26 AA00
0122cv1_C_C512_U513AAwAA01810.30 AA01
0132cv1_C_U513_A514AAuAA12650.39 AA12
0142cv1_C_A514_G515A-BAB01110.59 AB01
0152cv1_C_G515_C516NANNANT01.45 AA05
0162cv1_C_C516_G518NANNANT01.33 OP21
0172cv1_C_G518_G519NANNANT01.08 AB02
0182cv1_C_G519_U520NANNANT02.14 OP15
0192cv1_C_U520.A_A521NANNANT00.76 OP29
0202cv1_C_U520_U520.ANANNANT00.60 OP03
0212cv1_C_A521_G522AAuAA07780.31 AA07
0222cv1_C_G522_G523AAAAA00500.17 AA00
0232cv1_C_G523_A524AAAAA00890.14 AA00
0242cv1_C_A524_C525AAAAA00790.18 AA00
0252cv1_C_C525_G526AAAAA00540.37 AA00
0262cv1_C_G526_C527AAAAA00920.21 AA00
0272cv1_C_C527_G528AAAAA00770.15 AA00
0282cv1_C_G528_G529AAAAA00890.15 AA00
0292cv1_C_G529_C530AAAAA00790.16 AA00
0302cv1_C_C530_C531AAAAA00980.09 AA00
0312cv1_C_C531_C532AAAAA08830.25 AA08
0322cv1_C_C532_U533AAAAA08650.42 AA08
0332cv1_C_U533_C534NANNANT00.62 OP04
0342cv1_C_C534_U535AAuAA12830.21 AA12
0352cv1_C_U535_C536AAAAA08880.22 AA08
0362cv1_C_C536_A537AAwAA01700.20 AA01
0372cv1_C_A537_A538AAAAA08670.33 AA08
0382cv1_C_A538_G539AAAAA00650.35 AA00
0392cv1_C_G539_G540AAAAA00920.09 AA00
0402cv1_C_G540_C541AAAAA00950.13 AA00
0412cv1_C_C541_C542AAAAA00870.14 AA00
0422cv1_C_C542_G543AAAAA00880.24 AA00
0432cv1_C_G543_A544AAAAA00860.18 AA00
0442cv1_C_A544_A545AAAAA00730.30 AA00
0452cv1_C_A545_A546NANNANT00.85 AA07
0462cv1_C_A546_C548NANNANT00.85 BB13
0472cv1_C_C548_G549NANNANT01.09 OP05
0482cv1_C_G549_G550AAAAA00650.22 AA00
0492cv1_C_G550_G551AAAAA00890.12 AA00
0502cv1_C_G551_G552AAwAA01570.28 AA01
0512cv1_C_G552_G553NANNANT00.50 AA10
0522cv1_C_G553_U554AAAAA08170.40 AA08
0532cv1_C_U554_U555AAAAA08860.32 AA08
0542cv1_C_U555_C556OPNOP04680.19 OP04
0552cv1_C_C556_G557AAAAA08660.31 AA08
0562cv1_C_G557_A558NANNANT01.07 AA11
0572cv1_C_A558_U559NANNANT01.31 OP05
0582cv1_C_U559_U560A-BAB01160.56 AB01
0592cv1_C_U560_C561OPNOP12640.27 OP12
0602cv1_C_C561_C562AAAAA00640.22 AA00
0612cv1_C_C562_C563AAAAA00930.12 AA00
0622cv1_C_C563_C564AAAAA00960.09 AA00
0632cv1_C_C564_C565AAAAA08880.20 AA08
0642cv1_C_C565_U566AAAAA00890.14 AA00
0652cv1_C_U566_G567AAAAA00760.21 AA00
0662cv1_C_G567_G568AAAAA00940.09 AA00
0672cv1_C_G568_G569AAAAA00880.17 AA00
0682cv1_C_G569_G570AAAAA00810.17 AA00
0692cv1_C_G570_U571AAAAA00770.20 AA00
0702cv1_C_U571_C572AAAAA00630.20 AA00
0712cv1_C_C572_A573NANNANT01.86 IC04
0722cv1_C_A573_C574NANNANT01.43 OP18
0732cv1_C_C574_C575NANNANT01.29 OP31
0742cv1_C_C575_A576NANNANT00.65 AA05
0752cv1_D_G501_G502AAAAA00740.19 AA00
0762cv1_D_G502_C503AAAAA00800.20 AA00
0772cv1_D_C503_C504AAAAA00800.12 AA00
0782cv1_D_C504_C505AAAAA00860.12 AA00
0792cv1_D_C505_C506AAAAA00870.20 AA00
0802cv1_D_C506_A507NANNANT00.42 AA03
0812cv1_D_A507_U508NANNANT02.01 OP01
0822cv1_D_U508_C509NANNANT00.53 IC07
0832cv1_D_C509_G510NANNANT01.79 OP04
0842cv1_D_G510_U511AAAAA00680.21 AA00
0852cv1_D_U511_C512AAAAA00690.23 AA00
0862cv1_D_C512_U513AAwAA01830.29 AA01
0872cv1_D_U513_A514AAuAA12660.38 AA12
0882cv1_D_A514_G515A-BAB01100.63 AB01
0892cv1_D_G515_C516NANNANT01.45 AA05
0902cv1_D_C516_G518NANNANT01.34 OP21
0912cv1_D_G518_G519NANNANT01.07 AB02
0922cv1_D_G519_U520NANNANT02.13 OP15
0932cv1_D_U520.A_A521NANNANT00.68 OP29
0942cv1_D_U520_U520.ANANNANT00.46 OP04
0952cv1_D_A521_G522AAuAA07790.29 AA07
0962cv1_D_G522_G523AAAAA00670.16 AA00
0972cv1_D_G523_A524AAAAA00860.13 AA00
0982cv1_D_A524_C525AAAAA00810.19 AA00
0992cv1_D_C525_G526AAAAA00580.36 AA00
1002cv1_D_G526_C527AAAAA00930.21 AA00
1012cv1_D_C527_G528AAAAA00740.15 AA00
1022cv1_D_G528_G529AAAAA00870.16 AA00
1032cv1_D_G529_C530AAAAA00790.16 AA00
1042cv1_D_C530_C531AAAAA00990.09 AA00
1052cv1_D_C531_C532AAAAA08810.27 AA08
1062cv1_D_C532_U533AAAAA08590.44 AA08
1072cv1_D_U533_C534NANNANT00.60 OP04
1082cv1_D_C534_U535AAuAA12820.21 AA12
1092cv1_D_U535_C536AAAAA08840.21 AA08
1102cv1_D_C536_A537AAwAA01690.19 AA01
1112cv1_D_A537_A538AAAAA08630.34 AA08
1122cv1_D_A538_G539AAAAA00710.34 AA00
1132cv1_D_G539_G540AAAAA00920.11 AA00
1142cv1_D_G540_C541AAAAA00950.14 AA00
1152cv1_D_C541_C542AAAAA00870.16 AA00
1162cv1_D_C542_G543AAAAA00920.24 AA00
1172cv1_D_G543_A544AAAAA00890.18 AA00
1182cv1_D_A544_A545AAAAA00650.30 AA00
1192cv1_D_A545_A546NANNANT00.92 AA07
1202cv1_D_A546_C548NANNANT00.84 BB13
1212cv1_D_C548_G549NANNANT01.12 OP05
1222cv1_D_G549_G550AAAAA00680.22 AA00
1232cv1_D_G550_G551AAAAA00860.13 AA00
1242cv1_D_G551_G552AAwAA01560.30 AA01
1252cv1_D_G552_G553NANNANT00.47 AA10
1262cv1_D_G553_U554AAAAA08130.39 AA08
1272cv1_D_U554_U555AAAAA08860.31 AA08
1282cv1_D_U555_C556OPNOP04740.19 OP04
1292cv1_D_C556_G557AAAAA00360.39 AA00
1302cv1_D_G557_A558NANNANT01.07 AA11
1312cv1_D_A558_U559NANNANT01.31 OP05
1322cv1_D_U559_U560A-BAB01150.58 AB01
1332cv1_D_U560_C561OPNOP12620.28 OP12
1342cv1_D_C561_C562AAAAA00640.24 AA00
1352cv1_D_C562_C563AAAAA00970.10 AA00
1362cv1_D_C563_C564AAAAA00850.12 AA00
1372cv1_D_C564_C565AAAAA00390.38 AA00
1382cv1_D_C565_U566AAAAA00950.14 AA00
1392cv1_D_U566_G567AAAAA00760.20 AA00
1402cv1_D_G567_G568AAAAA00910.08 AA00
1412cv1_D_G568_G569AAAAA00860.14 AA00
1422cv1_D_G569_G570AAAAA00650.17 AA00
1432cv1_D_G570_U571AAAAA00830.18 AA00
1442cv1_D_U571_C572AAAAA00600.19 AA00
1452cv1_D_C572_A573NANNANT01.87 IC04
1462cv1_D_A573_C574NANNANT01.33 OP18
1472cv1_D_C574_C575NANNANT01.31 OP31
1482cv1_D_C575_A576AAwAA01270.45 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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