DNATCO v4.1: results

Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) and methionyl-adenylate anologue

Results of the assignment of 146 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2ct8_C_G1_G2	AAA	AA00	96	0.12	AA00
002	2ct8_C_G2_C3	AAA	AA00	57	0.24	AA00
003	2ct8_C_C3_G4	AAA	AA00	81	0.11	AA00
004	2ct8_C_G4_G5	AAA	AA00	81	0.24	AA00
005	2ct8_C_G5_C6	AAA	AA08	60	0.32	AA08
006	2ct8_C_C6_G7	AAA	AA00	17	0.32	AA00
007	2ct8_C_G7_U8	NAN	NANT	0	1.17	OP30
008	2ct8_C_U8_A9	NAN	NANT	0	0.53	AA13
009	2ct8_C_A9_G10	NAN	NANT	0	1.27	OP26
010	2ct8_C_G10_C11	AAA	AA00	69	0.26	AA00
011	2ct8_C_C11_U12	NAN	NANT	0	0.83	IC03
012	2ct8_C_U12_C13	AAw	AA05	52	0.29	AA05
013	2ct8_C_C13_A14	NAN	NANT	0	0.90	IC03
014	2ct8_C_A14_G15	AAw	AA10	23	0.47	AA10
015	2ct8_C_G15_C16	NAN	NANT	0	1.01	OP06
016	2ct8_C_C16_U17	NAN	NANT	0	1.13	AA10
017	2ct8_C_U17_G18	NAN	NANT	0	1.33	OP06
018	2ct8_C_G18_G19	NAN	NANT	0	0.69	AA01
019	2ct8_C_G19_U20	NAN	NANT	0	1.31	OP30
020	2ct8_C_C20.A_A21	NAN	NANT	0	2.65	OP08
021	2ct8_C_U20_C20.A	NAN	NANT	0	1.37	OP08
022	2ct8_C_A21_G22	NAN	NANT	0	0.58	IC07
023	2ct8_C_G22_A23	AAA	AA00	52	0.17	AA00
024	2ct8_C_A23_G24	AAA	AA00	79	0.19	AA00
025	2ct8_C_G24_C25	AAA	AA00	74	0.14	AA00
026	2ct8_C_C25_G26	AAA	AA00	68	0.37	AA00
027	2ct8_C_G26_G27	AAA	AA00	55	0.36	AA00
028	2ct8_C_G27_G28	AAA	AA00	59	0.25	AA00
029	2ct8_C_G28_G29	AAA	AA00	93	0.15	AA00
030	2ct8_C_G29_A30	AAA	AA00	76	0.27	AA00
031	2ct8_C_A30_U31	AAA	AA00	81	0.13	AA00
032	2ct8_C_U31_C32	AAu	AA12	69	0.18	AA12
033	2ct8_C_C32_U33	NAN	NANT	0	0.69	AA04
034	2ct8_C_U33_C34	NAN	NANT	0	1.26	AA13
035	2ct8_C_C34_A35	AAA	AA00	18	0.34	AA00
036	2ct8_C_A35_U36	NAN	NANT	0	0.60	OP04
037	2ct8_C_U36_A37	NAN	NANT	0	1.14	OP17
038	2ct8_C_A37_A38	NAN	NANT	0	1.66	BB08
039	2ct8_C_A38_G39	NAN	NANT	0	0.63	AA08
040	2ct8_C_G39_U40	AAA	AA00	74	0.24	AA00
041	2ct8_C_U40_C41	AAA	AA00	94	0.10	AA00
042	2ct8_C_C41_C42	AAA	AA00	77	0.15	AA00
043	2ct8_C_C42_C43	AAA	AA00	54	0.24	AA00
044	2ct8_C_C43_A44	NAN	NANT	0	0.75	AA08
045	2ct8_C_A44_G45	NAN	NANT	0	2.53	OP04
046	2ct8_C_G45_G46	NAN	NANT	0	1.07	OP25
047	2ct8_C_G46_U47	NAN	NANT	0	1.16	OP03
048	2ct8_C_U47_C48	NAN	NANT	0	1.21	OP05
049	2ct8_C_C48_G49	NAN	NANT	0	1.31	OP06
050	2ct8_C_G49_G50	NAN	NANT	0	0.83	AA04
051	2ct8_C_G50_A51	AAA	AA00	52	0.33	AA00
052	2ct8_C_A51_G52	AAA	AA00	80	0.28	AA00
053	2ct8_C_G52_G53	AAw	AA06	63	0.38	AA06
054	2ct8_C_G53_U54	NAN	NANT	0	0.80	IC03
055	2ct8_C_U54_U55	AAw	AA05	69	0.36	AA05
056	2ct8_C_U55_C56	OPN	OP03	64	0.28	OP03
057	2ct8_C_C56_G57	AAA	AA00	23	0.52	AA00
058	2ct8_C_G57_A58	NAN	NANT	0	0.73	AA07
059	2ct8_C_A58_G59	NAN	NANT	0	2.44	OP01
060	2ct8_C_G59_U60	NAN	NANT	0	0.70	AAS1
061	2ct8_C_U60_C61	NAN	NANT	0	0.67	OP12
062	2ct8_C_C61_C62	AAA	AA00	89	0.14	AA00
063	2ct8_C_C62_U63	AAA	AA00	83	0.19	AA00
064	2ct8_C_U63_C64	AAA	AA00	68	0.24	AA00
065	2ct8_C_C64_C65	AAA	AA00	79	0.20	AA00
066	2ct8_C_C65_C66	AAA	AA00	94	0.13	AA00
067	2ct8_C_C66_G67	AAA	AA00	86	0.21	AA00
068	2ct8_C_G67_C68	AAw	AA01	83	0.29	AA01
069	2ct8_C_C68_C69	AAA	AA08	75	0.18	AA08
070	2ct8_C_C69_G70	AAA	AA00	58	0.21	AA00
071	2ct8_C_G70_C71	AAA	AA00	87	0.14	AA00
072	2ct8_C_C71_C72	AAA	AA00	72	0.38	AA00
073	2ct8_C_C72_A73	AAA	AA00	66	0.28	AA00
074	2ct8_D_G1_G2	AAA	AA00	31	0.35	AA00
075	2ct8_D_G2_C3	AAA	AA08	79	0.21	AA08
076	2ct8_D_C3_G4	AAA	AA04	77	0.20	AA04
077	2ct8_D_G4_G5	AAA	AA00	91	0.14	AA00
078	2ct8_D_G5_C6	AAA	AA00	83	0.22	AA00
079	2ct8_D_C6_G7	AAA	AA00	51	0.22	AA00
080	2ct8_D_G7_U8	NAN	NANT	0	1.17	OP30
081	2ct8_D_U8_A9	NAN	NANT	0	0.78	AA07
082	2ct8_D_A9_G10	NAN	NANT	0	1.32	OP26
083	2ct8_D_G10_C11	AAA	AA00	51	0.34	AA00
084	2ct8_D_C11_U12	AAA	AA00	74	0.25	AA00
085	2ct8_D_U12_C13	AAw	AA01	83	0.18	AA01
086	2ct8_D_C13_A14	AAu	AA12	36	0.47	AA12
087	2ct8_D_A14_G15	AAw	AA05	71	0.40	AA05
088	2ct8_D_G15_C16	NAN	NANT	0	0.73	OP06
089	2ct8_D_C16_U17	NAN	NANT	0	1.06	IC03
090	2ct8_D_U17_G18	NAN	NANT	0	0.72	OP05
091	2ct8_D_G18_G19	NAN	NANT	0	0.65	AA12
092	2ct8_D_G19_U20	NAN	NANT	0	1.10	OP07
093	2ct8_D_C20.A_A21	NAN	NANT	0	1.86	AA05
094	2ct8_D_U20_C20.A	NAN	NANT	0	1.55	OP04
095	2ct8_D_A21_G22	NAN	NANT	0	0.73	AA01
096	2ct8_D_G22_A23	AAA	AA08	38	0.37	AA08
097	2ct8_D_A23_G24	AAA	AA00	84	0.13	AA00
098	2ct8_D_G24_C25	AAA	AA08	92	0.16	AA08
099	2ct8_D_C25_G26	AAA	AA00	77	0.25	AA00
100	2ct8_D_G26_G27	AAA	AA00	81	0.32	AA00
101	2ct8_D_G27_G28	AAA	AA00	89	0.17	AA00
102	2ct8_D_G28_G29	AAA	AA00	85	0.21	AA00
103	2ct8_D_G29_A30	AAA	AA08	85	0.18	AA08
104	2ct8_D_A30_U31	AAA	AA08	86	0.14	AA08
105	2ct8_D_U31_C32	AAu	AA12	86	0.11	AA12
106	2ct8_D_C32_U33	NAN	NANT	0	0.64	AA03
107	2ct8_D_U33_C34	NAN	NANT	0	1.21	AA13
108	2ct8_D_C34_A35	AAA	AA09	63	0.32	AA09
109	2ct8_D_A35_U36	NAN	NANT	0	0.70	OP04
110	2ct8_D_U36_A37	NAN	NANT	0	1.13	OP17
111	2ct8_D_A37_A38	NAN	NANT	0	1.78	OP24
112	2ct8_D_A38_G39	NAN	NANT	0	0.57	AA08
113	2ct8_D_G39_U40	AAA	AA00	72	0.24	AA00
114	2ct8_D_U40_C41	AAA	AA00	75	0.12	AA00
115	2ct8_D_C41_C42	AAA	AA00	85	0.21	AA00
116	2ct8_D_C42_C43	AAA	AA00	88	0.20	AA00
117	2ct8_D_C43_A44	AAA	AA00	89	0.17	AA00
118	2ct8_D_A44_G45	AAA	AA03	11	0.48	AA03
119	2ct8_D_G45_G46	NAN	NANT	0	1.18	AB02
120	2ct8_D_G46_U47	NAN	NANT	0	0.47	OP29
121	2ct8_D_U47_C48	NAN	NANT	0	1.65	OP06
122	2ct8_D_C48_G49	NAN	NANT	0	1.29	OP30
123	2ct8_D_G49_G50	AAA	AA00	20	0.35	AA00
124	2ct8_D_G50_A51	AAA	AA00	86	0.16	AA00
125	2ct8_D_A51_G52	NAN	NANT	0	0.62	AA06
126	2ct8_D_G52_G53	AAw	AA01	65	0.27	AA01
127	2ct8_D_G53_U54	AAA	AA04	32	0.56	AA04
128	2ct8_D_U54_U55	AAA	AA08	69	0.33	AA08
129	2ct8_D_U55_C56	OPN	OP03	8	0.74	OP03
130	2ct8_D_C56_G57	NAN	NANT	0	0.56	AA10
131	2ct8_D_G57_A58	NAN	NANT	0	1.12	AB02
132	2ct8_D_A58_G59	NAN	NANT	0	1.50	OP05
133	2ct8_D_G59_U60	AAA	AA08	49	0.43	AA08
134	2ct8_D_U60_C61	NAN	NANT	0	1.96	OP10
135	2ct8_D_C61_C62	NAN	NANT	0	0.80	AA11
136	2ct8_D_C62_U63	NAN	NANT	0	0.87	AB04
137	2ct8_D_U63_C64	AAA	AA00	33	0.35	AA00
138	2ct8_D_C64_C65	AAw	AA01	78	0.19	AA01
139	2ct8_D_C65_C66	AAA	AA00	51	0.34	AA00
140	2ct8_D_C66_G67	AAA	AA00	69	0.23	AA00
141	2ct8_D_G67_C68	AAw	AA01	76	0.26	AA01
142	2ct8_D_C68_C69	AAA	AA00	87	0.22	AA00
143	2ct8_D_C69_G70	AAA	AA00	91	0.13	AA00
144	2ct8_D_G70_C71	AAA	AA00	90	0.15	AA00
145	2ct8_D_C71_C72	AAA	AA00	85	0.16	AA00
146	2ct8_D_C72_A73	NAN	NANT	0	0.50	AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 146 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible